Class: ScaffoldRepeats

URI: img_core_v400:ScaffoldRepeats

classDiagram class ScaffoldRepeats click ScaffoldRepeats href "../ScaffoldRepeats/" ScaffoldRepeats : end_coord ScaffoldRepeats : n_copies ScaffoldRepeats : scaffold_oid ScaffoldRepeats : start_coord ScaffoldRepeats : type

Slots

Name	Cardinality and Range	Inheritance
scaffold_oid	0..1 Integer	direct
start_coord	0..1 Integer	direct
end_coord	0..1 Integer	direct
n_copies	0..1 Integer	direct
type	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:ScaffoldRepeats
native	img_core_v400:ScaffoldRepeats

LinkML Source

Direct

name: scaffold_repeats
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - delete_scaffolds
    - dt_intergenic
    - scaffold
    - scaffold_ext_links
    - scaffold_nx_feature
    - scaffold_repeats
    - scaffold_stats
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  n_copies:
    name: n_copies
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - scaffold_repeats
    range: integer
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - accession_types
    - genome_property
    - interpro
    - pfam_family
    - scaffold_repeats
    range: string
    required: false

Induced

name: scaffold_repeats
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: scaffold_oid
    owner: scaffold_repeats
    domain_of:
    - delete_scaffolds
    - dt_intergenic
    - scaffold
    - scaffold_ext_links
    - scaffold_nx_feature
    - scaffold_repeats
    - scaffold_stats
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: start_coord
    owner: scaffold_repeats
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: end_coord
    owner: scaffold_repeats
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  n_copies:
    name: n_copies
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: n_copies
    owner: scaffold_repeats
    domain_of:
    - scaffold_repeats
    range: integer
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: type
    owner: scaffold_repeats
    domain_of:
    - accession_types
    - genome_property
    - interpro
    - pfam_family
    - scaffold_repeats
    range: string
    required: false