Class: TaxonCrisprSummary

URI: img_core_v400:TaxonCrisprSummary

classDiagram class TaxonCrisprSummary click TaxonCrisprSummary href "../TaxonCrisprSummary/" TaxonCrisprSummary : contig_id TaxonCrisprSummary : crispr_no TaxonCrisprSummary : end_coord TaxonCrisprSummary : start_coord TaxonCrisprSummary : taxon_oid

Slots

Name	Cardinality and Range	Inheritance
taxon_oid	0..1 Integer	direct
contig_id	0..1 String	direct
crispr_no	0..1 Integer	direct
start_coord	0..1 Integer	direct
end_coord	0..1 Integer	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:TaxonCrisprSummary
native	img_core_v400:TaxonCrisprSummary

LinkML Source

Direct

name: taxon_crispr_summary
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  contig_id:
    name: contig_id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - taxon_crispr_details
    - taxon_crispr_summary
    range: string
    required: false
  crispr_no:
    name: crispr_no
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - taxon_crispr_details
    - taxon_crispr_summary
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false

Induced

name: taxon_crispr_summary
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon_oid
    owner: taxon_crispr_summary
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  contig_id:
    name: contig_id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: contig_id
    owner: taxon_crispr_summary
    domain_of:
    - taxon_crispr_details
    - taxon_crispr_summary
    range: string
    required: false
  crispr_no:
    name: crispr_no
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: crispr_no
    owner: taxon_crispr_summary
    domain_of:
    - taxon_crispr_details
    - taxon_crispr_summary
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: start_coord
    owner: taxon_crispr_summary
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: end_coord
    owner: taxon_crispr_summary
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false