Class: TaxonExtLinks
URI: img_core_v400:TaxonExtLinks
classDiagram
class TaxonExtLinks
click TaxonExtLinks href "../TaxonExtLinks/"
TaxonExtLinks : custom_url
TaxonExtLinks : db_name
TaxonExtLinks --> "0..1" DbSource : db_name
click DbSource href "../DbSource/"
TaxonExtLinks : id
TaxonExtLinks : taxon_oid
TaxonExtLinks --> "0..1" Taxon : taxon_oid
click Taxon href "../Taxon/"
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| taxon_oid | 0..1 Taxon |
Foreign key to taxon | direct |
| db_name | 0..1 DbSource |
Foreign key to db_source | direct |
| id | 0..1 String |
direct | |
| custom_url | 0..1 String |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_core_v400
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_core_v400:TaxonExtLinks |
| native | img_core_v400:TaxonExtLinks |
LinkML Source
Direct
name: taxon_ext_links
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
taxon_oid:
name: taxon_oid
description: Foreign key to taxon
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- asv5_taxons
- bcg_taxons
- dt_all_phylo_taxon_stats
- dt_cog_stats
- dt_kog_stats
- dt_phylo_taxon_stats
- dt_phylodist_new_taxons
- dt_phylum_dist_genes
- dt_phylum_dist_stats
- dt_scog_genes
- dt_taxon_kmodule_mcr
- img_iuig_tarballs_11202023
- img_umag_bin_tarballs_02062024
- imgnr_taxons_062123
- iso_plasmids
- kp_actino
- kp_taxons
- new_taxons
- new_taxons_batch
- old_taxons
- tarball_refresh_taxons
- taxon
- taxon_assembly_stats
- taxon_cathfunfam_count
- taxon_cog_count
- taxon_crispr_details
- taxon_crispr_summary
- taxon_dw
- taxon_ec_count
- taxon_ext_links
- taxon_gene_prefix
- taxon_gtdbtk_lineage
- taxon_ko_count
- taxon_pfam_count
- taxon_prod_vw
- taxon_replacements
- taxon_replacements_view
- taxon_scaf_prefix
- taxon_smart_count
- taxon_smc_stats
- taxon_stats
- taxon_stats_merfs
- taxon_stats_prod_vw
- taxon_supfam_count
- taxon_taxon_scaffold_info
- taxon_tigr_count
- vw_gold_taxon
- vw_taxon_sc
range: taxon
required: false
db_name:
name: db_name
description: Foreign key to db_source
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_comp_ext_links
- biocyc_enzrxn_ext_links
- biocyc_pathway_ext_links
- biocyc_protein_ext_links
- biocyc_reaction_ext_links
- compound_ext_links
- enzyme_ext_links
- gene_cathfam
- gene_ext_links
- gene_pdb_xrefs
- gene_smart
- gene_superfam
- gene_xref_families
- pfam_family_ext_links
- reaction_ext_links
- scaffold_ext_links
- taxon_ext_links
range: db_source
required: false
id:
name: id
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_comp_ext_links
- biocyc_enzrxn_ext_links
- biocyc_pathway_ext_links
- biocyc_protein_ext_links
- biocyc_reaction_ext_links
- compound_ext_links
- enzyme_ext_links
- gene_cathfam
- gene_ext_links
- gene_pdb_xrefs
- gene_smart
- gene_superfam
- gene_xref_families
- pfam_family_ext_links
- reaction_ext_links
- scaffold_ext_links
- taxon_ext_links
range: string
required: false
custom_url:
name: custom_url
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- gene_ext_links
- scaffold_ext_links
- taxon_ext_links
range: string
required: false
Induced
name: taxon_ext_links
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
taxon_oid:
name: taxon_oid
description: Foreign key to taxon
from_schema: https://w3id.org/jgi/img_core_v400
alias: taxon_oid
owner: taxon_ext_links
domain_of:
- asv5_taxons
- bcg_taxons
- dt_all_phylo_taxon_stats
- dt_cog_stats
- dt_kog_stats
- dt_phylo_taxon_stats
- dt_phylodist_new_taxons
- dt_phylum_dist_genes
- dt_phylum_dist_stats
- dt_scog_genes
- dt_taxon_kmodule_mcr
- img_iuig_tarballs_11202023
- img_umag_bin_tarballs_02062024
- imgnr_taxons_062123
- iso_plasmids
- kp_actino
- kp_taxons
- new_taxons
- new_taxons_batch
- old_taxons
- tarball_refresh_taxons
- taxon
- taxon_assembly_stats
- taxon_cathfunfam_count
- taxon_cog_count
- taxon_crispr_details
- taxon_crispr_summary
- taxon_dw
- taxon_ec_count
- taxon_ext_links
- taxon_gene_prefix
- taxon_gtdbtk_lineage
- taxon_ko_count
- taxon_pfam_count
- taxon_prod_vw
- taxon_replacements
- taxon_replacements_view
- taxon_scaf_prefix
- taxon_smart_count
- taxon_smc_stats
- taxon_stats
- taxon_stats_merfs
- taxon_stats_prod_vw
- taxon_supfam_count
- taxon_taxon_scaffold_info
- taxon_tigr_count
- vw_gold_taxon
- vw_taxon_sc
range: taxon
required: false
db_name:
name: db_name
description: Foreign key to db_source
from_schema: https://w3id.org/jgi/img_core_v400
alias: db_name
owner: taxon_ext_links
domain_of:
- biocyc_comp_ext_links
- biocyc_enzrxn_ext_links
- biocyc_pathway_ext_links
- biocyc_protein_ext_links
- biocyc_reaction_ext_links
- compound_ext_links
- enzyme_ext_links
- gene_cathfam
- gene_ext_links
- gene_pdb_xrefs
- gene_smart
- gene_superfam
- gene_xref_families
- pfam_family_ext_links
- reaction_ext_links
- scaffold_ext_links
- taxon_ext_links
range: db_source
required: false
id:
name: id
from_schema: https://w3id.org/jgi/img_core_v400
alias: id
owner: taxon_ext_links
domain_of:
- biocyc_comp_ext_links
- biocyc_enzrxn_ext_links
- biocyc_pathway_ext_links
- biocyc_protein_ext_links
- biocyc_reaction_ext_links
- compound_ext_links
- enzyme_ext_links
- gene_cathfam
- gene_ext_links
- gene_pdb_xrefs
- gene_smart
- gene_superfam
- gene_xref_families
- pfam_family_ext_links
- reaction_ext_links
- scaffold_ext_links
- taxon_ext_links
range: string
required: false
custom_url:
name: custom_url
from_schema: https://w3id.org/jgi/img_core_v400
alias: custom_url
owner: taxon_ext_links
domain_of:
- gene_ext_links
- scaffold_ext_links
- taxon_ext_links
range: string
required: false