Class: TaxonGtdbtkLineage

URI: img_core_v400:TaxonGtdbtkLineage

classDiagram class TaxonGtdbtkLineage click TaxonGtdbtkLineage href "../TaxonGtdbtkLineage/" TaxonGtdbtkLineage : checkm_completeness TaxonGtdbtkLineage : checkm_contamination TaxonGtdbtkLineage : gtdbtk_class TaxonGtdbtkLineage : gtdbtk_domain TaxonGtdbtkLineage : gtdbtk_family TaxonGtdbtkLineage : gtdbtk_genus TaxonGtdbtkLineage : gtdbtk_lineage TaxonGtdbtkLineage : gtdbtk_order TaxonGtdbtkLineage : gtdbtk_phylum TaxonGtdbtkLineage : gtdbtk_species TaxonGtdbtkLineage : taxon_oid TaxonGtdbtkLineage : version_info

Slots

Name	Cardinality and Range	Inheritance
taxon_oid	0..1 Integer	direct
gtdbtk_lineage	0..1 String	direct
gtdbtk_domain	0..1 String	direct
gtdbtk_phylum	0..1 String	direct
gtdbtk_class	0..1 String	direct
gtdbtk_order	0..1 String	direct
gtdbtk_family	0..1 String	direct
gtdbtk_genus	0..1 String	direct
gtdbtk_species	0..1 String	direct
checkm_completeness	0..1 Float	direct
checkm_contamination	0..1 Float	direct
version_info	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:TaxonGtdbtkLineage
native	img_core_v400:TaxonGtdbtkLineage

LinkML Source

Direct

name: taxon_gtdbtk_lineage
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  gtdbtk_lineage:
    name: gtdbtk_lineage
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_domain:
    name: gtdbtk_domain
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_phylum:
    name: gtdbtk_phylum
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_class:
    name: gtdbtk_class
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_order:
    name: gtdbtk_order
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_family:
    name: gtdbtk_family
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_genus:
    name: gtdbtk_genus
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_species:
    name: gtdbtk_species
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  checkm_completeness:
    name: checkm_completeness
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: float
    required: false
  checkm_contamination:
    name: checkm_contamination
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: float
    required: false
  version_info:
    name: version_info
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false

Induced

name: taxon_gtdbtk_lineage
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon_oid
    owner: taxon_gtdbtk_lineage
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  gtdbtk_lineage:
    name: gtdbtk_lineage
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_lineage
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_domain:
    name: gtdbtk_domain
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_domain
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_phylum:
    name: gtdbtk_phylum
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_phylum
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_class:
    name: gtdbtk_class
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_class
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_order:
    name: gtdbtk_order
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_order
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_family:
    name: gtdbtk_family
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_family
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_genus:
    name: gtdbtk_genus
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_genus
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  gtdbtk_species:
    name: gtdbtk_species
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gtdbtk_species
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false
  checkm_completeness:
    name: checkm_completeness
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: checkm_completeness
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: float
    required: false
  checkm_contamination:
    name: checkm_contamination
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: checkm_contamination
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: float
    required: false
  version_info:
    name: version_info
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: version_info
    owner: taxon_gtdbtk_lineage
    domain_of:
    - taxon_gtdbtk_lineage
    range: string
    required: false