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Class: TaxonNodeLite

URI: img_core_v400:TaxonNodeLite

classDiagram class TaxonNodeLite click TaxonNodeLite href "../TaxonNodeLite/" TaxonNodeLite : display_name TaxonNodeLite : node_oid TaxonNodeLite : parent TaxonNodeLite --> "0..1" TaxonNodeLite : parent click TaxonNodeLite href "../TaxonNodeLite/" TaxonNodeLite : rank_name TaxonNodeLite : taxon TaxonNodeLite --> "0..1" Taxon : taxon click Taxon href "../Taxon/"

Slots

Name Cardinality and Range Description Inheritance
node_oid 0..1
Integer		 direct
display_name 0..1
String		 direct
rank_name 0..1
String		 direct
taxon 0..1
Taxon		 Foreign key to taxon direct
parent 0..1
TaxonNodeLite		 Foreign key to taxon_node_lite direct

Usages

used by used in type used
TaxonNodeLite parent range TaxonNodeLite

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:TaxonNodeLite
native img_core_v400:TaxonNodeLite

LinkML Source

Direct

name: taxon_node_lite
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  node_oid:
    name: node_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_taxon_node_lite
    - taxon_node_lite
    range: integer
    required: false
  display_name:
    name: display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_taxon_node_lite
    - taxon_node_lite
    range: string
    required: false
  rank_name:
    name: rank_name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_taxon_node_lite
    - taxon_node_lite
    range: string
    required: false
  taxon:
    name: taxon
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: taxon
    required: false
  parent:
    name: parent
    description: Foreign key to taxon_node_lite
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - compound
    - dt_taxon_node_lite
    - go_term_parents
    - taxon_node_lite
    range: taxon_node_lite
    required: false

Induced

name: taxon_node_lite
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  node_oid:
    name: node_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: node_oid
    owner: taxon_node_lite
    domain_of:
    - dt_taxon_node_lite
    - taxon_node_lite
    range: integer
    required: false
  display_name:
    name: display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: display_name
    owner: taxon_node_lite
    domain_of:
    - dt_taxon_node_lite
    - taxon_node_lite
    range: string
    required: false
  rank_name:
    name: rank_name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: rank_name
    owner: taxon_node_lite
    domain_of:
    - dt_taxon_node_lite
    - taxon_node_lite
    range: string
    required: false
  taxon:
    name: taxon
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon
    owner: taxon_node_lite
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: taxon
    required: false
  parent:
    name: parent
    description: Foreign key to taxon_node_lite
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: parent
    owner: taxon_node_lite
    domain_of:
    - compound
    - dt_taxon_node_lite
    - go_term_parents
    - taxon_node_lite
    range: taxon_node_lite
    required: false