Class: TaxonReplacements

URI: img_core_v400:TaxonReplacements

classDiagram class TaxonReplacements click TaxonReplacements href "../TaxonReplacements/" TaxonReplacements : comments TaxonReplacements : img_version TaxonReplacements : old_taxon_name TaxonReplacements : old_taxon_oid TaxonReplacements : release_date TaxonReplacements : taxon_oid TaxonReplacements --> "0..1" Taxon : taxon_oid click Taxon href "../Taxon/"

Slots

Name	Cardinality and Range	Description	Inheritance
taxon_oid	0..1 Taxon	Foreign key to taxon	direct
old_taxon_oid	0..1 Integer		direct
img_version	0..1 String		direct
release_date	0..1 Datetime		direct
old_taxon_name	0..1 String		direct
comments	0..1 String		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:TaxonReplacements
native	img_core_v400:TaxonReplacements

LinkML Source

Direct

name: taxon_replacements
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: taxon
    required: false
  old_taxon_oid:
    name: old_taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - delete_taxons
    - map_taxon_pairs
    - taxon_replacements
    - taxon_replacements_view
    range: integer
    required: false
  img_version:
    name: img_version
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - img_build
    - img_content_history
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - img_build
    - img_content_history
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: datetime
    required: false
  old_taxon_name:
    name: old_taxon_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - taxon_replacements
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false

Induced

name: taxon_replacements
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon_oid
    owner: taxon_replacements
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: taxon
    required: false
  old_taxon_oid:
    name: old_taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: old_taxon_oid
    owner: taxon_replacements
    domain_of:
    - delete_taxons
    - map_taxon_pairs
    - taxon_replacements
    - taxon_replacements_view
    range: integer
    required: false
  img_version:
    name: img_version
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: img_version
    owner: taxon_replacements
    domain_of:
    - img_build
    - img_content_history
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: release_date
    owner: taxon_replacements
    domain_of:
    - img_build
    - img_content_history
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: datetime
    required: false
  old_taxon_name:
    name: old_taxon_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: old_taxon_name
    owner: taxon_replacements
    domain_of:
    - taxon_replacements
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: comments
    owner: taxon_replacements
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false