Skip to content

img_ext

URI: https://w3id.org/jgi/img_ext

Name: img_ext

Classes

Class Description
Assertioncv
BcExtLinks
CellLocalization
Componentcv
CompoundExtDb
DbSource
DtAllPhyloTaxonStats
DtPhyloTaxonStats
GeneFunctionHistory
GeneHistory
GeneImgFunctions
GeneMyimgFunctions
GeneMyimgGroups
ImgBuild
ImgBuildHistory
ImgCompound
ImgCompoundActivity
ImgCompoundAliases
ImgCompoundExtLinks
ImgCompoundKeggCompounds
ImgCompoundMeshdTree
ImgGoldPhenotype
ImgJobParamcv
ImgJobStatuscv
ImgJobTypecv
ImgPartsList
ImgPartsListBackup
ImgPartsListHistory
ImgPartsListImgTerms
ImgPathway
ImgPathwayAssertions
ImgPathwayCComponents
ImgPathwayHistory
ImgPathwayReactions
ImgPathwayTComponents
ImgPathwayTaxons
ImgReaction
ImgReactionAssocNetworks
ImgReactionAssocPaths
ImgReactionAssocRxns
ImgReactionCComponents
ImgReactionCatalysts
ImgReactionExtLinks
ImgReactionTComponents
ImgTerm
ImgTermChildren
ImgTermEnzymes
ImgTermGraphPath
ImgTermHistory
ImgTermSynonyms
Imgtermcv
MeshDtree
Mygene
MygeneImgGroups
MygeneTerms
MyimgBioClusterNp
MyimgJob
MyimgJobParameters
MyimgJobUsers
NaturalProduct
NpActivityCv
NpBiosynthesisSource
NpSimilarity
PathwayNetwork
PathwayNetworkCComponents
PathwayNetworkImgPathways
PathwayNetworkParents
PathwayNetworkPartsLists
PathwayNetworkTComponents
PathwayNetworkTaxons
PhenotypeRule
PhenotypeRuleTaxons
PublicSet
Statuscv
TaxonCathfunfamCount
TaxonCogCount
TaxonEcCount
TaxonKoCount
TaxonPfamCount
TaxonSmartCount
TaxonSupfamCount
TaxonTigrCount
TaxonUpdateRequest
Yesnocv

Slots

Slot Description
a_flag
aa_checksum
aa_residue
aa_seq_length
action
activity
add_date
admin_notes
aliases
annot_oid
author
base_url
build_date
build_number
build_oid
c_order
c_type Foreign key to componentcv
cas_number
catalysts Foreign key to img_term
cell_loc Foreign key to cell_localization
cell_loc_new
cell_loc_old
child Foreign key to img_term
class
cluster_id
comments
common_name
component_cv
composition
compound
compound_name
compound_oid
compound_oid1
compound_oid2
confidence
confidence_new
confidence_old
contact
contact_oid
created_by
cv_term
cv_type
cv_value
data_path
data_type
database
db_code
db_name
db_source Foreign key to db_source
definition
description
distance
dna_coords
dna_seq_length
domain
ec_number
end_coord
enzymes
eqn_grammer
est_copy_30
est_copy_60
est_copy_90
evidence
evidence_new
evidence_old
ext_accession
f_flag
f_order
family
flag_cv
formula
func_id
function Foreign key to img_term
function_new
function_old
genbank_id
gene_count
gene_count_30
gene_count_60
gene_count_90
gene_display_name
gene_oid
gene_symbol
genus
graph_path_oid
group_id
handle
handle_new
handle_old
hitgene_oid
homolog_taxon
id
image_id
img_build
img_job_id
img_orf_type
img_orf_type_new
img_orf_type_old
img_version
inchi
inchi_key
inference
ir_class
ir_order
is_mandatory
is_partial
is_pseudogene Foreign key to yesnocv
is_public
is_reversible Foreign key to yesnocv
is_root Foreign key to yesnocv
is_sm
is_valid Foreign key to yesnocv
job_type Foreign key to img_job_typecv
list_order
loc_type
locus_tag
locus_type
log_file
main_flag Foreign key to yesnocv
mod_date
modified_by
mol_weight
mygene_oid
name
ncbi_acc
ncbi_taxon
network Foreign key to pathway_network
network_name
network_oid
node
notes
np_class
np_id
np_product_link
np_product_name
np_sub_class
np_type
num_atoms
num_bonds
obsolete_flag
param_type Foreign key to img_job_paramcv
param_value
parent Foreign key to pathway_network
parts_list
parts_list_name
parts_list_new
parts_list_oid
parts_list_old
pathway Foreign key to img_pathway
pathway_name
pathway_name_new
pathway_name_old
pathway_oid
phylum
prev_build_gene_oid
prev_build_pathway_oid
prev_build_term_oid
product_name
project_oid
prot_desc
protein_seq_accid
pubmed_id
refresh_date
rel_type
release_date
replacing_gene
request_date
requested_by
rule
rule_id
rule_type
rxn Foreign key to img_reaction
rxn_definition
rxn_equation
rxn_name
rxn_oid
rxn_order
rxn_type
scaffold
scaffold_count
seq_dir
set_id
set_type
sim_score
smiles
source
species
start_coord
status
stoich
strand
sub_cell_loc Foreign key to cell_localization
synonyms
taxon
taxon_node
taxon_oid
term Foreign key to img_term
term_1 Foreign key to img_term
term_2 Foreign key to img_term
term_cv
term_new
term_oid
term_old
term_type Foreign key to imgtermcv
term_type_new
term_type_old
url_template
user_notes
users

Enumerations

Enumeration Description

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description