Class: GeneHistory

URI: img_ext:GeneHistory

classDiagram class GeneHistory click GeneHistory href "../GeneHistory/" GeneHistory : aa_checksum GeneHistory : action GeneHistory : add_date GeneHistory : annot_oid GeneHistory : author GeneHistory : comments GeneHistory : contact GeneHistory : gene_oid GeneHistory : img_build GeneHistory --> "0..1" ImgBuildHistory : img_build click ImgBuildHistory href "../ImgBuildHistory/" GeneHistory : img_orf_type_new GeneHistory : img_orf_type_old GeneHistory : prev_build_gene_oid GeneHistory : taxon

Slots

Name	Cardinality and Range	Description	Inheritance
annot_oid	0..1 Integer		direct
author	0..1 String		direct
contact	0..1 Integer		direct
taxon	0..1 Integer		direct
img_build	0..1 ImgBuildHistory	Foreign key to img_build_history	direct
gene_oid	0..1 Integer		direct
prev_build_gene_oid	0..1 Integer		direct
aa_checksum	0..1 String		direct
img_orf_type_old	0..1 String		direct
img_orf_type_new	0..1 String		direct
action	0..1 String		direct
comments	0..1 String		direct
add_date	0..1 Datetime		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:GeneHistory
native	img_ext:GeneHistory

LinkML Source

Direct

name: gene_history
from_schema: https://w3id.org/jgi/img_ext
attributes:
  annot_oid:
    name: annot_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: integer
    required: false
  author:
    name: author
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    - myimg_job
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false
  img_build:
    name: img_build
    description: Foreign key to img_build_history
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: img_build_history
    required: false
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - gene_myimg_functions
    - gene_myimg_groups
    range: integer
    required: false
  prev_build_gene_oid:
    name: prev_build_gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    range: integer
    required: false
  aa_checksum:
    name: aa_checksum
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    range: string
    required: false
  img_orf_type_old:
    name: img_orf_type_old
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_history
    range: string
    required: false
  img_orf_type_new:
    name: img_orf_type_new
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_history
    range: string
    required: false
  action:
    name: action
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false

Induced

name: gene_history
from_schema: https://w3id.org/jgi/img_ext
attributes:
  annot_oid:
    name: annot_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: annot_oid
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: integer
    required: false
  author:
    name: author
    from_schema: https://w3id.org/jgi/img_ext
    alias: author
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/img_ext
    alias: contact
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    - myimg_job
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    alias: taxon
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false
  img_build:
    name: img_build
    description: Foreign key to img_build_history
    from_schema: https://w3id.org/jgi/img_ext
    alias: img_build
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: img_build_history
    required: false
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: gene_oid
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - gene_myimg_functions
    - gene_myimg_groups
    range: integer
    required: false
  prev_build_gene_oid:
    name: prev_build_gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: prev_build_gene_oid
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    range: integer
    required: false
  aa_checksum:
    name: aa_checksum
    from_schema: https://w3id.org/jgi/img_ext
    alias: aa_checksum
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    range: string
    required: false
  img_orf_type_old:
    name: img_orf_type_old
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: img_orf_type_old
    owner: gene_history
    domain_of:
    - gene_history
    range: string
    required: false
  img_orf_type_new:
    name: img_orf_type_new
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: img_orf_type_new
    owner: gene_history
    domain_of:
    - gene_history
    range: string
    required: false
  action:
    name: action
    from_schema: https://w3id.org/jgi/img_ext
    alias: action
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    alias: comments
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: gene_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false