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Class: GeneImgFunctions

URI: img_ext:GeneImgFunctions

classDiagram class GeneImgFunctions click GeneImgFunctions href "../GeneImgFunctions/" GeneImgFunctions : cell_loc GeneImgFunctions --> "0..1" CellLocalization : cell_loc click CellLocalization href "../CellLocalization/" GeneImgFunctions : confidence GeneImgFunctions : evidence GeneImgFunctions : f_flag GeneImgFunctions : f_order GeneImgFunctions : function GeneImgFunctions --> "0..1" ImgTerm : function click ImgTerm href "../ImgTerm/" GeneImgFunctions : gene_oid GeneImgFunctions : mod_date GeneImgFunctions : modified_by GeneImgFunctions : scaffold GeneImgFunctions : taxon

Slots

Name Cardinality and Range Description Inheritance
gene_oid 0..1
Integer		 direct
function 0..1
ImgTerm		 Foreign key to img_term direct
f_order 0..1
Integer		 direct
evidence 0..1
String		 direct
confidence 0..1
String		 direct
mod_date 0..1
Datetime		 direct
modified_by 0..1
Integer		 direct
cell_loc 0..1
CellLocalization		 Foreign key to cell_localization direct
f_flag 0..1
String		 direct
taxon 0..1
Float		 direct
scaffold 0..1
Float		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type Mapped Value
self img_ext:GeneImgFunctions
native img_ext:GeneImgFunctions

LinkML Source

Direct

name: gene_img_functions
from_schema: https://w3id.org/jgi/img_ext
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - gene_myimg_functions
    - gene_myimg_groups
    range: integer
    required: false
  function:
    name: function
    description: Foreign key to img_term
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_img_functions
    range: img_term
    required: false
  f_order:
    name: f_order
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_img_functions
    range: integer
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  confidence:
    name: confidence
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_img_functions
    - img_pathway_taxons
    - pathway_network_taxons
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  cell_loc:
    name: cell_loc
    description: Foreign key to cell_localization
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_img_functions
    range: cell_localization
    required: false
  f_flag:
    name: f_flag
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_img_functions
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: float
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_img_functions
    - mygene
    range: float
    required: false

Induced

name: gene_img_functions
from_schema: https://w3id.org/jgi/img_ext
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: gene_oid
    owner: gene_img_functions
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - gene_myimg_functions
    - gene_myimg_groups
    range: integer
    required: false
  function:
    name: function
    description: Foreign key to img_term
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: function
    owner: gene_img_functions
    domain_of:
    - gene_img_functions
    range: img_term
    required: false
  f_order:
    name: f_order
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: f_order
    owner: gene_img_functions
    domain_of:
    - gene_img_functions
    range: integer
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: evidence
    owner: gene_img_functions
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  confidence:
    name: confidence
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: confidence
    owner: gene_img_functions
    domain_of:
    - gene_img_functions
    - img_pathway_taxons
    - pathway_network_taxons
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: gene_img_functions
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: gene_img_functions
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  cell_loc:
    name: cell_loc
    description: Foreign key to cell_localization
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: cell_loc
    owner: gene_img_functions
    domain_of:
    - gene_img_functions
    range: cell_localization
    required: false
  f_flag:
    name: f_flag
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: f_flag
    owner: gene_img_functions
    domain_of:
    - gene_img_functions
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    alias: taxon
    owner: gene_img_functions
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: float
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: scaffold
    owner: gene_img_functions
    domain_of:
    - gene_img_functions
    - mygene
    range: float
    required: false