Class: GeneMyimgFunctions

URI: img_ext:GeneMyimgFunctions

classDiagram class GeneMyimgFunctions click GeneMyimgFunctions href "../GeneMyimgFunctions/" GeneMyimgFunctions : ec_number GeneMyimgFunctions : gene_oid GeneMyimgFunctions : gene_symbol GeneMyimgFunctions : inference GeneMyimgFunctions : is_pseudogene GeneMyimgFunctions --> "0..1" Yesnocv : is_pseudogene click Yesnocv href "../Yesnocv/" GeneMyimgFunctions : is_public GeneMyimgFunctions : mod_date GeneMyimgFunctions : modified_by GeneMyimgFunctions : notes GeneMyimgFunctions : obsolete_flag GeneMyimgFunctions : product_name GeneMyimgFunctions : prot_desc GeneMyimgFunctions : pubmed_id

Slots

Name	Cardinality and Range	Description	Inheritance
gene_oid	0..1 Integer		direct
product_name	0..1 String		direct
prot_desc	0..1 String		direct
ec_number	0..1 String		direct
pubmed_id	0..1 String		direct
inference	0..1 String		direct
is_pseudogene	0..1 Yesnocv	Foreign key to yesnocv	direct
notes	0..1 String		direct
modified_by	0..1 Integer		direct
mod_date	0..1 Datetime		direct
gene_symbol	0..1 String		direct
obsolete_flag	0..1 String		direct
is_public	0..1 String		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:GeneMyimgFunctions
native	img_ext:GeneMyimgFunctions

LinkML Source

Direct

name: gene_myimg_functions
from_schema: https://w3id.org/jgi/img_ext
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - gene_myimg_functions
    - gene_myimg_groups
    range: integer
    required: false
  product_name:
    name: product_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  prot_desc:
    name: prot_desc
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    range: string
    required: false
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  pubmed_id:
    name: pubmed_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    - img_term
    range: string
    required: false
  inference:
    name: inference
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    range: string
    required: false
  is_pseudogene:
    name: is_pseudogene
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    - mygene
    range: yesnocv
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    range: string
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  gene_symbol:
    name: gene_symbol
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - gene_myimg_functions
    - mygene
    - myimg_bio_cluster_np
    - myimg_job
    range: string
    required: false

Induced

name: gene_myimg_functions
from_schema: https://w3id.org/jgi/img_ext
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: gene_oid
    owner: gene_myimg_functions
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - gene_myimg_functions
    - gene_myimg_groups
    range: integer
    required: false
  product_name:
    name: product_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: product_name
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  prot_desc:
    name: prot_desc
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: prot_desc
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    range: string
    required: false
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: ec_number
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  pubmed_id:
    name: pubmed_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: pubmed_id
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    - img_term
    range: string
    required: false
  inference:
    name: inference
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: inference
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    range: string
    required: false
  is_pseudogene:
    name: is_pseudogene
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: is_pseudogene
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    - mygene
    range: yesnocv
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: notes
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    range: string
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: gene_myimg_functions
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: gene_myimg_functions
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  gene_symbol:
    name: gene_symbol
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: gene_symbol
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: obsolete_flag
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: is_public
    owner: gene_myimg_functions
    domain_of:
    - gene_myimg_functions
    - mygene
    - myimg_bio_cluster_np
    - myimg_job
    range: string
    required: false