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Class: ImgCompound

URI: img_ext:ImgCompound

classDiagram class ImgCompound click ImgCompound href "../ImgCompound/" ImgCompound : add_date ImgCompound : cas_number ImgCompound : class ImgCompound : common_name ImgCompound : composition ImgCompound : compound_name ImgCompound : compound_oid ImgCompound : db_source ImgCompound --> "0..1" DbSource : db_source click DbSource href "../DbSource/" ImgCompound : ext_accession ImgCompound : formula ImgCompound : inchi ImgCompound : inchi_key ImgCompound : is_sm ImgCompound : mod_date ImgCompound : modified_by ImgCompound : mol_weight ImgCompound : np_class ImgCompound : np_sub_class ImgCompound : num_atoms ImgCompound : num_bonds ImgCompound : smiles ImgCompound : status

Slots

Name Cardinality and Range Description Inheritance
compound_oid 0..1
Integer		 direct
ext_accession 0..1
String		 direct
db_source 0..1
DbSource		 Foreign key to db_source direct
compound_name 0..1
String		 direct
common_name 0..1
String		 direct
class 0..1
String		 direct
composition 0..1
String		 direct
formula 0..1
String		 direct
cas_number 0..1
String		 direct
status 0..1
String		 direct
add_date 0..1
Datetime		 direct
mod_date 0..1
Datetime		 direct
modified_by 0..1
Integer		 direct
mol_weight 0..1
Float		 direct
num_atoms 0..1
Float		 direct
np_class 0..1
String		 direct
np_sub_class 0..1
String		 direct
smiles 0..1
String		 direct
inchi 0..1
String		 direct
inchi_key 0..1
String		 direct
num_bonds 0..1
Float		 direct
is_sm 0..1
String		 direct

Usages

used by used in type used
ImgCompoundAliases compound_oid range ImgCompound
ImgCompoundExtLinks compound_oid range ImgCompound
ImgCompoundKeggCompounds compound_oid range ImgCompound
ImgPathwayCComponents compound range ImgCompound
ImgReactionCComponents compound range ImgCompound
PathwayNetworkCComponents compound range ImgCompound

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type Mapped Value
self img_ext:ImgCompound
native img_ext:ImgCompound

LinkML Source

Direct

name: img_compound
from_schema: https://w3id.org/jgi/img_ext
attributes:
  compound_oid:
    name: compound_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    - img_compound_activity
    - img_compound_aliases
    - img_compound_ext_links
    - img_compound_kegg_compounds
    - img_compound_meshd_tree
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: integer
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: db_source
    required: false
  compound_name:
    name: compound_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  class:
    name: class
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  composition:
    name: composition
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  formula:
    name: formula
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  cas_number:
    name: cas_number
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    - img_pathway_assertions
    - img_pathway_taxons
    - myimg_job
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  mol_weight:
    name: mol_weight
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: float
    required: false
  num_atoms:
    name: num_atoms
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: float
    required: false
  np_class:
    name: np_class
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  np_sub_class:
    name: np_sub_class
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  smiles:
    name: smiles
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  inchi:
    name: inchi
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  inchi_key:
    name: inchi_key
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false
  num_bonds:
    name: num_bonds
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: float
    required: false
  is_sm:
    name: is_sm
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_compound
    range: string
    required: false

Induced

name: img_compound
from_schema: https://w3id.org/jgi/img_ext
attributes:
  compound_oid:
    name: compound_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: compound_oid
    owner: img_compound
    domain_of:
    - img_compound
    - img_compound_activity
    - img_compound_aliases
    - img_compound_ext_links
    - img_compound_kegg_compounds
    - img_compound_meshd_tree
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: integer
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: ext_accession
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: db_source
    owner: img_compound
    domain_of:
    - img_compound
    range: db_source
    required: false
  compound_name:
    name: compound_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: compound_name
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: common_name
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  class:
    name: class
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: class
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  composition:
    name: composition
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: composition
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  formula:
    name: formula
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: formula
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  cas_number:
    name: cas_number
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: cas_number
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: status
    owner: img_compound
    domain_of:
    - img_compound
    - img_pathway_assertions
    - img_pathway_taxons
    - myimg_job
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: img_compound
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: img_compound
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: img_compound
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  mol_weight:
    name: mol_weight
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: mol_weight
    owner: img_compound
    domain_of:
    - img_compound
    range: float
    required: false
  num_atoms:
    name: num_atoms
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: num_atoms
    owner: img_compound
    domain_of:
    - img_compound
    range: float
    required: false
  np_class:
    name: np_class
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: np_class
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  np_sub_class:
    name: np_sub_class
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: np_sub_class
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  smiles:
    name: smiles
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: smiles
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  inchi:
    name: inchi
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: inchi
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  inchi_key:
    name: inchi_key
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: inchi_key
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false
  num_bonds:
    name: num_bonds
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: num_bonds
    owner: img_compound
    domain_of:
    - img_compound
    range: float
    required: false
  is_sm:
    name: is_sm
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: is_sm
    owner: img_compound
    domain_of:
    - img_compound
    range: string
    required: false