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Class: ImgPathway

URI: img_ext:ImgPathway

classDiagram class ImgPathway click ImgPathway href "../ImgPathway/" ImgPathway : add_date ImgPathway : handle ImgPathway : is_valid ImgPathway --> "0..1" Yesnocv : is_valid click Yesnocv href "../Yesnocv/" ImgPathway : mod_date ImgPathway : modified_by ImgPathway : pathway_name ImgPathway : pathway_oid

Slots

Name Cardinality and Range Description Inheritance
pathway_oid 0..1
Integer		 direct
pathway_name 0..1
String		 direct
handle 0..1
String		 direct
add_date 0..1
Datetime		 direct
mod_date 0..1
Datetime		 direct
modified_by 0..1
Integer		 direct
is_valid 0..1
Yesnocv		 Foreign key to yesnocv direct

Usages

used by used in type used
ImgPathwayAssertions pathway_oid range ImgPathway
ImgPathwayCComponents pathway_oid range ImgPathway
ImgPathwayHistory pathway range ImgPathway
ImgPathwayReactions pathway_oid range ImgPathway
ImgPathwayTComponents pathway_oid range ImgPathway
ImgPathwayTaxons pathway_oid range ImgPathway
ImgReactionAssocPaths pathway range ImgPathway
PathwayNetworkImgPathways pathway range ImgPathway

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type Mapped Value
self img_ext:ImgPathway
native img_ext:ImgPathway

LinkML Source

Direct

name: img_pathway
from_schema: https://w3id.org/jgi/img_ext
attributes:
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway
    - img_pathway_assertions
    - img_pathway_c_components
    - img_pathway_history
    - img_pathway_reactions
    - img_pathway_t_components
    - img_pathway_taxons
    range: integer
    required: false
  pathway_name:
    name: pathway_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway
    range: string
    required: false
  handle:
    name: handle
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  is_valid:
    name: is_valid
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway
    - img_term
    range: yesnocv
    required: false

Induced

name: img_pathway
from_schema: https://w3id.org/jgi/img_ext
attributes:
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: pathway_oid
    owner: img_pathway
    domain_of:
    - img_pathway
    - img_pathway_assertions
    - img_pathway_c_components
    - img_pathway_history
    - img_pathway_reactions
    - img_pathway_t_components
    - img_pathway_taxons
    range: integer
    required: false
  pathway_name:
    name: pathway_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: pathway_name
    owner: img_pathway
    domain_of:
    - img_pathway
    range: string
    required: false
  handle:
    name: handle
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: handle
    owner: img_pathway
    domain_of:
    - img_pathway
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: img_pathway
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: img_pathway
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: img_pathway
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  is_valid:
    name: is_valid
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: is_valid
    owner: img_pathway
    domain_of:
    - img_pathway
    - img_term
    range: yesnocv
    required: false