Class: ImgPathwayAssertions

URI: img_ext:ImgPathwayAssertions

classDiagram class ImgPathwayAssertions click ImgPathwayAssertions href "../ImgPathwayAssertions/" ImgPathwayAssertions : comments ImgPathwayAssertions : evidence ImgPathwayAssertions : mod_date ImgPathwayAssertions : modified_by ImgPathwayAssertions : pathway_oid ImgPathwayAssertions --> "0..1" ImgPathway : pathway_oid click ImgPathway href "../ImgPathway/" ImgPathwayAssertions : status ImgPathwayAssertions --> "0..1" Assertioncv : status click Assertioncv href "../Assertioncv/" ImgPathwayAssertions : taxon ImgPathwayAssertions : taxon_node

Slots

Name	Cardinality and Range	Description	Inheritance
pathway_oid	0..1 ImgPathway	Foreign key to img_pathway	direct
taxon_node	0..1 Integer		direct
status	0..1 Assertioncv	Foreign key to assertioncv	direct
evidence	0..1 String		direct
comments	0..1 String		direct
mod_date	0..1 Datetime		direct
modified_by	0..1 Integer		direct
taxon	0..1 Integer		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:ImgPathwayAssertions
native	img_ext:ImgPathwayAssertions

LinkML Source

Direct

name: img_pathway_assertions
from_schema: https://w3id.org/jgi/img_ext
attributes:
  pathway_oid:
    name: pathway_oid
    description: Foreign key to img_pathway
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_pathway
    - img_pathway_assertions
    - img_pathway_c_components
    - img_pathway_history
    - img_pathway_reactions
    - img_pathway_t_components
    - img_pathway_taxons
    range: img_pathway
    required: false
  taxon_node:
    name: taxon_node
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway_assertions
    range: integer
    required: false
  status:
    name: status
    description: Foreign key to assertioncv
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_compound
    - img_pathway_assertions
    - img_pathway_taxons
    - myimg_job
    range: assertioncv
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false

Induced

name: img_pathway_assertions
from_schema: https://w3id.org/jgi/img_ext
attributes:
  pathway_oid:
    name: pathway_oid
    description: Foreign key to img_pathway
    from_schema: https://w3id.org/jgi/img_ext
    alias: pathway_oid
    owner: img_pathway_assertions
    domain_of:
    - img_pathway
    - img_pathway_assertions
    - img_pathway_c_components
    - img_pathway_history
    - img_pathway_reactions
    - img_pathway_t_components
    - img_pathway_taxons
    range: img_pathway
    required: false
  taxon_node:
    name: taxon_node
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: taxon_node
    owner: img_pathway_assertions
    domain_of:
    - img_pathway_assertions
    range: integer
    required: false
  status:
    name: status
    description: Foreign key to assertioncv
    from_schema: https://w3id.org/jgi/img_ext
    alias: status
    owner: img_pathway_assertions
    domain_of:
    - img_compound
    - img_pathway_assertions
    - img_pathway_taxons
    - myimg_job
    range: assertioncv
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    alias: evidence
    owner: img_pathway_assertions
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    alias: comments
    owner: img_pathway_assertions
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: img_pathway_assertions
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: img_pathway_assertions
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    alias: taxon
    owner: img_pathway_assertions
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false