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Class: ImgPathwayHistory

URI: img_ext:ImgPathwayHistory

classDiagram class ImgPathwayHistory click ImgPathwayHistory href "../ImgPathwayHistory/" ImgPathwayHistory : action ImgPathwayHistory : add_date ImgPathwayHistory : annot_oid ImgPathwayHistory : author ImgPathwayHistory : comments ImgPathwayHistory : contact ImgPathwayHistory : handle_new ImgPathwayHistory : handle_old ImgPathwayHistory : img_build ImgPathwayHistory --> "0..1" ImgBuildHistory : img_build click ImgBuildHistory href "../ImgBuildHistory/" ImgPathwayHistory : pathway ImgPathwayHistory --> "0..1" ImgPathway : pathway click ImgPathway href "../ImgPathway/" ImgPathwayHistory : pathway_name_new ImgPathwayHistory : pathway_name_old ImgPathwayHistory : pathway_oid ImgPathwayHistory : prev_build_pathway_oid

Slots

Name Cardinality and Range Description Inheritance
annot_oid 0..1
Integer		 direct
author 0..1
String		 direct
contact 0..1
Integer		 direct
img_build 0..1
ImgBuildHistory		 Foreign key to img_build_history direct
pathway_oid 0..1
Integer		 direct
pathway 0..1
ImgPathway		 Foreign key to img_pathway direct
prev_build_pathway_oid 0..1
Integer		 direct
pathway_name_old 0..1
String		 direct
handle_old 0..1
String		 direct
pathway_name_new 0..1
String		 direct
handle_new 0..1
String		 direct
action 0..1
String		 direct
comments 0..1
String		 direct
add_date 0..1
Datetime		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type Mapped Value
self img_ext:ImgPathwayHistory
native img_ext:ImgPathwayHistory

LinkML Source

Direct

name: img_pathway_history
from_schema: https://w3id.org/jgi/img_ext
attributes:
  annot_oid:
    name: annot_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: integer
    required: false
  author:
    name: author
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    - myimg_job
    range: integer
    required: false
  img_build:
    name: img_build
    description: Foreign key to img_build_history
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: img_build_history
    required: false
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_pathway
    - img_pathway_assertions
    - img_pathway_c_components
    - img_pathway_history
    - img_pathway_reactions
    - img_pathway_t_components
    - img_pathway_taxons
    range: integer
    required: false
  pathway:
    name: pathway
    description: Foreign key to img_pathway
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway_history
    - img_reaction_assoc_paths
    - pathway_network_img_pathways
    range: img_pathway
    required: false
  prev_build_pathway_oid:
    name: prev_build_pathway_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway_history
    range: integer
    required: false
  pathway_name_old:
    name: pathway_name_old
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway_history
    range: string
    required: false
  handle_old:
    name: handle_old
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway_history
    range: string
    required: false
  pathway_name_new:
    name: pathway_name_new
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway_history
    range: string
    required: false
  handle_new:
    name: handle_new
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_pathway_history
    range: string
    required: false
  action:
    name: action
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false

Induced

name: img_pathway_history
from_schema: https://w3id.org/jgi/img_ext
attributes:
  annot_oid:
    name: annot_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: annot_oid
    owner: img_pathway_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: integer
    required: false
  author:
    name: author
    from_schema: https://w3id.org/jgi/img_ext
    alias: author
    owner: img_pathway_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/img_ext
    alias: contact
    owner: img_pathway_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    - myimg_job
    range: integer
    required: false
  img_build:
    name: img_build
    description: Foreign key to img_build_history
    from_schema: https://w3id.org/jgi/img_ext
    alias: img_build
    owner: img_pathway_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: img_build_history
    required: false
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: pathway_oid
    owner: img_pathway_history
    domain_of:
    - img_pathway
    - img_pathway_assertions
    - img_pathway_c_components
    - img_pathway_history
    - img_pathway_reactions
    - img_pathway_t_components
    - img_pathway_taxons
    range: integer
    required: false
  pathway:
    name: pathway
    description: Foreign key to img_pathway
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: pathway
    owner: img_pathway_history
    domain_of:
    - img_pathway_history
    - img_reaction_assoc_paths
    - pathway_network_img_pathways
    range: img_pathway
    required: false
  prev_build_pathway_oid:
    name: prev_build_pathway_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: prev_build_pathway_oid
    owner: img_pathway_history
    domain_of:
    - img_pathway_history
    range: integer
    required: false
  pathway_name_old:
    name: pathway_name_old
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: pathway_name_old
    owner: img_pathway_history
    domain_of:
    - img_pathway_history
    range: string
    required: false
  handle_old:
    name: handle_old
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: handle_old
    owner: img_pathway_history
    domain_of:
    - img_pathway_history
    range: string
    required: false
  pathway_name_new:
    name: pathway_name_new
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: pathway_name_new
    owner: img_pathway_history
    domain_of:
    - img_pathway_history
    range: string
    required: false
  handle_new:
    name: handle_new
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: handle_new
    owner: img_pathway_history
    domain_of:
    - img_pathway_history
    range: string
    required: false
  action:
    name: action
    from_schema: https://w3id.org/jgi/img_ext
    alias: action
    owner: img_pathway_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_history
    - img_term_history
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    alias: comments
    owner: img_pathway_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: img_pathway_history
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false