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Class: ImgReaction

URI: img_ext:ImgReaction

classDiagram class ImgReaction click ImgReaction href "../ImgReaction/" ImgReaction : add_date ImgReaction : comments ImgReaction : is_reversible ImgReaction --> "0..1" Yesnocv : is_reversible click Yesnocv href "../Yesnocv/" ImgReaction : mod_date ImgReaction : modified_by ImgReaction : rxn_definition ImgReaction : rxn_equation ImgReaction : rxn_name ImgReaction : rxn_oid ImgReaction : rxn_type

Slots

Name Cardinality and Range Description Inheritance
rxn_oid 0..1
Integer		 direct
rxn_name 0..1
String		 direct
rxn_definition 0..1
String		 direct
rxn_equation 0..1
String		 direct
is_reversible 0..1
Yesnocv		 Foreign key to yesnocv direct
comments 0..1
String		 direct
add_date 0..1
Datetime		 direct
mod_date 0..1
Datetime		 direct
modified_by 0..1
Integer		 direct
rxn_type 0..1
String		 direct

Usages

used by used in type used
ImgPathwayReactions rxn range ImgReaction
ImgReactionAssocNetworks rxn_oid range ImgReaction
ImgReactionAssocPaths rxn_oid range ImgReaction
ImgReactionAssocRxns rxn_oid range ImgReaction
ImgReactionAssocRxns rxn range ImgReaction
ImgReactionCComponents rxn_oid range ImgReaction
ImgReactionCatalysts rxn_oid range ImgReaction
ImgReactionExtLinks rxn_oid range ImgReaction
ImgReactionTComponents rxn_oid range ImgReaction

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type Mapped Value
self img_ext:ImgReaction
native img_ext:ImgReaction

LinkML Source

Direct

name: img_reaction
from_schema: https://w3id.org/jgi/img_ext
attributes:
  rxn_oid:
    name: rxn_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_reaction_c_components
    - img_reaction_catalysts
    - img_reaction_ext_links
    - img_reaction_t_components
    range: integer
    required: false
  rxn_name:
    name: rxn_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_reaction
    range: string
    required: false
  rxn_definition:
    name: rxn_definition
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_reaction
    range: string
    required: false
  rxn_equation:
    name: rxn_equation
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_reaction
    range: string
    required: false
  is_reversible:
    name: is_reversible
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_reaction
    range: yesnocv
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  rxn_type:
    name: rxn_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_reaction
    range: string
    required: false

Induced

name: img_reaction
from_schema: https://w3id.org/jgi/img_ext
attributes:
  rxn_oid:
    name: rxn_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: rxn_oid
    owner: img_reaction
    domain_of:
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_reaction_c_components
    - img_reaction_catalysts
    - img_reaction_ext_links
    - img_reaction_t_components
    range: integer
    required: false
  rxn_name:
    name: rxn_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: rxn_name
    owner: img_reaction
    domain_of:
    - img_reaction
    range: string
    required: false
  rxn_definition:
    name: rxn_definition
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: rxn_definition
    owner: img_reaction
    domain_of:
    - img_reaction
    range: string
    required: false
  rxn_equation:
    name: rxn_equation
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: rxn_equation
    owner: img_reaction
    domain_of:
    - img_reaction
    range: string
    required: false
  is_reversible:
    name: is_reversible
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: is_reversible
    owner: img_reaction
    domain_of:
    - img_reaction
    range: yesnocv
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    alias: comments
    owner: img_reaction
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: img_reaction
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: img_reaction
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: img_reaction
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  rxn_type:
    name: rxn_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: rxn_type
    owner: img_reaction
    domain_of:
    - img_reaction
    range: string
    required: false