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Class: ImgTerm

URI: img_ext:ImgTerm

classDiagram class ImgTerm click ImgTerm href "../ImgTerm/" ImgTerm : add_date ImgTerm : comments ImgTerm : definition ImgTerm : is_root ImgTerm --> "0..1" Yesnocv : is_root click Yesnocv href "../Yesnocv/" ImgTerm : is_valid ImgTerm --> "0..1" Yesnocv : is_valid click Yesnocv href "../Yesnocv/" ImgTerm : mod_date ImgTerm : modified_by ImgTerm : pubmed_id ImgTerm : term ImgTerm : term_oid ImgTerm : term_type ImgTerm --> "0..1" Imgtermcv : term_type click Imgtermcv href "../Imgtermcv/"

Slots

Name Cardinality and Range Description Inheritance
term_oid 0..1
Integer		 direct
term 0..1
String		 direct
term_type 0..1
Imgtermcv		 Foreign key to imgtermcv direct
definition 0..1
String		 direct
comments 0..1
String		 direct
is_root 0..1
Yesnocv		 Foreign key to yesnocv direct
add_date 0..1
Datetime		 direct
mod_date 0..1
Datetime		 direct
modified_by 0..1
Integer		 direct
is_valid 0..1
Yesnocv		 Foreign key to yesnocv direct
pubmed_id 0..1
String		 direct

Usages

used by used in type used
GeneImgFunctions function range ImgTerm
ImgPartsListImgTerms term range ImgTerm
ImgPathwayTComponents term range ImgTerm
ImgReactionCatalysts catalysts range ImgTerm
ImgReactionTComponents term range ImgTerm
ImgTermChildren term_oid range ImgTerm
ImgTermChildren child range ImgTerm
ImgTermEnzymes term_oid range ImgTerm
ImgTermGraphPath term_1 range ImgTerm
ImgTermGraphPath term_2 range ImgTerm
ImgTermHistory term range ImgTerm
ImgTermSynonyms term_oid range ImgTerm
PathwayNetworkTComponents term range ImgTerm

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type Mapped Value
self img_ext:ImgTerm
native img_ext:ImgTerm

LinkML Source

Direct

name: img_term
from_schema: https://w3id.org/jgi/img_ext
attributes:
  term_oid:
    name: term_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_term
    - img_term_children
    - img_term_enzymes
    - img_term_history
    - img_term_synonyms
    - mygene_terms
    range: integer
    required: false
  term:
    name: term
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_parts_list_img_terms
    - img_pathway_t_components
    - img_reaction_t_components
    - img_term
    - img_term_history
    - pathway_network_t_components
    range: string
    required: false
  term_type:
    name: term_type
    description: Foreign key to imgtermcv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_term
    range: imgtermcv
    required: false
  definition:
    name: definition
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - img_parts_list
    - img_parts_list_backup
    - img_term
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  is_root:
    name: is_root
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - img_term
    range: yesnocv
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  is_valid:
    name: is_valid
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_pathway
    - img_term
    range: yesnocv
    required: false
  pubmed_id:
    name: pubmed_id
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_myimg_functions
    - img_term
    range: string
    required: false

Induced

name: img_term
from_schema: https://w3id.org/jgi/img_ext
attributes:
  term_oid:
    name: term_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: term_oid
    owner: img_term
    domain_of:
    - img_term
    - img_term_children
    - img_term_enzymes
    - img_term_history
    - img_term_synonyms
    - mygene_terms
    range: integer
    required: false
  term:
    name: term
    from_schema: https://w3id.org/jgi/img_ext
    alias: term
    owner: img_term
    domain_of:
    - img_parts_list_img_terms
    - img_pathway_t_components
    - img_reaction_t_components
    - img_term
    - img_term_history
    - pathway_network_t_components
    range: string
    required: false
  term_type:
    name: term_type
    description: Foreign key to imgtermcv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: term_type
    owner: img_term
    domain_of:
    - img_term
    range: imgtermcv
    required: false
  definition:
    name: definition
    from_schema: https://w3id.org/jgi/img_ext
    alias: definition
    owner: img_term
    domain_of:
    - cell_localization
    - img_parts_list
    - img_parts_list_backup
    - img_term
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    alias: comments
    owner: img_term
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  is_root:
    name: is_root
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: is_root
    owner: img_term
    domain_of:
    - img_term
    range: yesnocv
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: img_term
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: img_term
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: img_term
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  is_valid:
    name: is_valid
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_ext
    alias: is_valid
    owner: img_term
    domain_of:
    - img_pathway
    - img_term
    range: yesnocv
    required: false
  pubmed_id:
    name: pubmed_id
    from_schema: https://w3id.org/jgi/img_ext
    alias: pubmed_id
    owner: img_term
    domain_of:
    - gene_myimg_functions
    - img_term
    range: string
    required: false