Class: Mygene

URI: img_ext:Mygene

classDiagram class Mygene click Mygene href "../Mygene/" Mygene : aa_residue Mygene : aa_seq_length Mygene : add_date Mygene : created_by Mygene : description Mygene : dna_coords Mygene : dna_seq_length Mygene : ec_number Mygene : end_coord Mygene : gene_display_name Mygene : gene_symbol Mygene : hitgene_oid Mygene : img_orf_type Mygene : is_pseudogene Mygene : is_public Mygene : locus_tag Mygene : locus_type Mygene : mod_date Mygene : modified_by Mygene : mygene_oid Mygene : obsolete_flag Mygene : product_name Mygene : protein_seq_accid Mygene : replacing_gene Mygene : scaffold Mygene : start_coord Mygene : strand Mygene : taxon

Slots

Name	Cardinality and Range	Inheritance
mygene_oid	0..1 Integer	direct
gene_symbol	0..1 String	direct
gene_display_name	0..1 String	direct
product_name	0..1 String	direct
ec_number	0..1 String	direct
locus_tag	0..1 String	direct
locus_type	0..1 String	direct
scaffold	0..1 Integer	direct
start_coord	0..1 Integer	direct
end_coord	0..1 Integer	direct
strand	0..1 String	direct
dna_seq_length	0..1 Integer	direct
aa_seq_length	0..1 Integer	direct
is_pseudogene	0..1 String	direct
description	0..1 String	direct
protein_seq_accid	0..1 String	direct
taxon	0..1 Integer	direct
img_orf_type	0..1 String	direct
obsolete_flag	0..1 String	direct
aa_residue	0..1 String	direct
add_date	0..1 Datetime	direct
mod_date	0..1 Datetime	direct
modified_by	0..1 Integer	direct
hitgene_oid	0..1 Integer	direct
dna_coords	0..1 String	direct
is_public	0..1 String	direct
replacing_gene	0..1 String	direct
created_by	0..1 Integer	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:Mygene
native	img_ext:Mygene

LinkML Source

Direct

name: mygene
from_schema: https://w3id.org/jgi/img_ext
attributes:
  mygene_oid:
    name: mygene_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    - mygene_img_groups
    - mygene_terms
    range: integer
    required: false
  gene_symbol:
    name: gene_symbol
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  gene_display_name:
    name: gene_display_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  product_name:
    name: product_name
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  locus_type:
    name: locus_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_img_functions
    - mygene
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: integer
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  dna_seq_length:
    name: dna_seq_length
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: integer
    required: false
  aa_seq_length:
    name: aa_seq_length
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: integer
    required: false
  is_pseudogene:
    name: is_pseudogene
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - assertioncv
    - componentcv
    - img_job_typecv
    - imgtermcv
    - mygene
    - pathway_network
    - phenotype_rule
    - public_set
    - statuscv
    - yesnocv
    range: string
    required: false
  protein_seq_accid:
    name: protein_seq_accid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false
  img_orf_type:
    name: img_orf_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  aa_residue:
    name: aa_residue
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  hitgene_oid:
    name: hitgene_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: integer
    required: false
  dna_coords:
    name: dna_coords
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_myimg_functions
    - mygene
    - myimg_bio_cluster_np
    - myimg_job
    range: string
    required: false
  replacing_gene:
    name: replacing_gene
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: string
    required: false
  created_by:
    name: created_by
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - mygene
    range: integer
    required: false

Induced

name: mygene
from_schema: https://w3id.org/jgi/img_ext
attributes:
  mygene_oid:
    name: mygene_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: mygene_oid
    owner: mygene
    domain_of:
    - mygene
    - mygene_img_groups
    - mygene_terms
    range: integer
    required: false
  gene_symbol:
    name: gene_symbol
    from_schema: https://w3id.org/jgi/img_ext
    alias: gene_symbol
    owner: mygene
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  gene_display_name:
    name: gene_display_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: gene_display_name
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  product_name:
    name: product_name
    from_schema: https://w3id.org/jgi/img_ext
    alias: product_name
    owner: mygene
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_ext
    alias: ec_number
    owner: mygene
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: locus_tag
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  locus_type:
    name: locus_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: locus_type
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_ext
    alias: scaffold
    owner: mygene
    domain_of:
    - gene_img_functions
    - mygene
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: start_coord
    owner: mygene
    domain_of:
    - mygene
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: end_coord
    owner: mygene
    domain_of:
    - mygene
    range: integer
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: strand
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  dna_seq_length:
    name: dna_seq_length
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: dna_seq_length
    owner: mygene
    domain_of:
    - mygene
    range: integer
    required: false
  aa_seq_length:
    name: aa_seq_length
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: aa_seq_length
    owner: mygene
    domain_of:
    - mygene
    range: integer
    required: false
  is_pseudogene:
    name: is_pseudogene
    from_schema: https://w3id.org/jgi/img_ext
    alias: is_pseudogene
    owner: mygene
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_ext
    alias: description
    owner: mygene
    domain_of:
    - assertioncv
    - componentcv
    - img_job_typecv
    - imgtermcv
    - mygene
    - pathway_network
    - phenotype_rule
    - public_set
    - statuscv
    - yesnocv
    range: string
    required: false
  protein_seq_accid:
    name: protein_seq_accid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: protein_seq_accid
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    alias: taxon
    owner: mygene
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false
  img_orf_type:
    name: img_orf_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: img_orf_type
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_ext
    alias: obsolete_flag
    owner: mygene
    domain_of:
    - gene_myimg_functions
    - mygene
    range: string
    required: false
  aa_residue:
    name: aa_residue
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: aa_residue
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: mygene
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: mygene
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: mygene
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false
  hitgene_oid:
    name: hitgene_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: hitgene_oid
    owner: mygene
    domain_of:
    - mygene
    range: integer
    required: false
  dna_coords:
    name: dna_coords
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: dna_coords
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_ext
    alias: is_public
    owner: mygene
    domain_of:
    - gene_myimg_functions
    - mygene
    - myimg_bio_cluster_np
    - myimg_job
    range: string
    required: false
  replacing_gene:
    name: replacing_gene
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: replacing_gene
    owner: mygene
    domain_of:
    - mygene
    range: string
    required: false
  created_by:
    name: created_by
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: created_by
    owner: mygene
    domain_of:
    - mygene
    range: integer
    required: false