Class: NaturalProduct

URI: img_ext:NaturalProduct

classDiagram class NaturalProduct click NaturalProduct href "../NaturalProduct/" NaturalProduct : activity NaturalProduct : cluster_id NaturalProduct : compound_oid NaturalProduct : evidence NaturalProduct : genbank_id NaturalProduct : mod_date NaturalProduct : modified_by NaturalProduct : np_id NaturalProduct : np_product_link NaturalProduct : np_product_name NaturalProduct : np_type NaturalProduct : project_oid NaturalProduct : taxon

Slots

Name	Cardinality and Range	Inheritance
np_id	0..1 Float	direct
np_product_name	0..1 String	direct
np_product_link	0..1 String	direct
project_oid	0..1 Float	direct
taxon	0..1 Float	direct
cluster_id	0..1 String	direct
genbank_id	0..1 String	direct
evidence	0..1 String	direct
np_type	0..1 String	direct
activity	0..1 String	direct
compound_oid	0..1 Float	direct
modified_by	0..1 Float	direct
mod_date	0..1 Datetime	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:NaturalProduct
native	img_ext:NaturalProduct

LinkML Source

Direct

name: natural_product
from_schema: https://w3id.org/jgi/img_ext
attributes:
  np_id:
    name: np_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - natural_product
    range: float
    required: false
  np_product_name:
    name: np_product_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - natural_product
    range: string
    required: false
  np_product_link:
    name: np_product_link
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - natural_product
    range: string
    required: false
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - natural_product
    range: float
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: float
    required: false
  cluster_id:
    name: cluster_id
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - bc_ext_links
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: string
    required: false
  genbank_id:
    name: genbank_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - natural_product
    range: string
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  np_type:
    name: np_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - natural_product
    range: string
    required: false
  activity:
    name: activity
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_compound_activity
    - natural_product
    range: string
    required: false
  compound_oid:
    name: compound_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_compound
    - img_compound_activity
    - img_compound_aliases
    - img_compound_ext_links
    - img_compound_kegg_compounds
    - img_compound_meshd_tree
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: float
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: float
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false

Induced

name: natural_product
from_schema: https://w3id.org/jgi/img_ext
attributes:
  np_id:
    name: np_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: np_id
    owner: natural_product
    domain_of:
    - natural_product
    range: float
    required: false
  np_product_name:
    name: np_product_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: np_product_name
    owner: natural_product
    domain_of:
    - natural_product
    range: string
    required: false
  np_product_link:
    name: np_product_link
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: np_product_link
    owner: natural_product
    domain_of:
    - natural_product
    range: string
    required: false
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: project_oid
    owner: natural_product
    domain_of:
    - natural_product
    range: float
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    alias: taxon
    owner: natural_product
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: float
    required: false
  cluster_id:
    name: cluster_id
    from_schema: https://w3id.org/jgi/img_ext
    alias: cluster_id
    owner: natural_product
    domain_of:
    - bc_ext_links
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: string
    required: false
  genbank_id:
    name: genbank_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: genbank_id
    owner: natural_product
    domain_of:
    - natural_product
    range: string
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    alias: evidence
    owner: natural_product
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  np_type:
    name: np_type
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: np_type
    owner: natural_product
    domain_of:
    - natural_product
    range: string
    required: false
  activity:
    name: activity
    from_schema: https://w3id.org/jgi/img_ext
    alias: activity
    owner: natural_product
    domain_of:
    - img_compound_activity
    - natural_product
    range: string
    required: false
  compound_oid:
    name: compound_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: compound_oid
    owner: natural_product
    domain_of:
    - img_compound
    - img_compound_activity
    - img_compound_aliases
    - img_compound_ext_links
    - img_compound_kegg_compounds
    - img_compound_meshd_tree
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: float
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: natural_product
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: float
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: natural_product
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false