Class: NpBiosynthesisSource

URI: img_ext:NpBiosynthesisSource

classDiagram class NpBiosynthesisSource click NpBiosynthesisSource href "../NpBiosynthesisSource/" NpBiosynthesisSource : cluster_id NpBiosynthesisSource : compound_oid NpBiosynthesisSource : is_partial NpBiosynthesisSource : mod_date NpBiosynthesisSource : modified_by NpBiosynthesisSource : ncbi_acc NpBiosynthesisSource : ncbi_taxon NpBiosynthesisSource : taxon_oid

Slots

Name	Cardinality and Range	Inheritance
cluster_id	0..1 String	direct
taxon_oid	0..1 Integer	direct
compound_oid	0..1 Integer	direct
ncbi_acc	0..1 String	direct
ncbi_taxon	0..1 Float	direct
is_partial	0..1 String	direct
modified_by	0..1 Float	direct
mod_date	0..1 Datetime	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:NpBiosynthesisSource
native	img_ext:NpBiosynthesisSource

LinkML Source

Direct

name: np_biosynthesis_source
from_schema: https://w3id.org/jgi/img_ext
attributes:
  cluster_id:
    name: cluster_id
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - bc_ext_links
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_ec_count
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_smart_count
    - taxon_supfam_count
    - taxon_tigr_count
    - taxon_update_request
    range: integer
    required: false
  compound_oid:
    name: compound_oid
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - img_compound
    - img_compound_activity
    - img_compound_aliases
    - img_compound_ext_links
    - img_compound_kegg_compounds
    - img_compound_meshd_tree
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: integer
    required: false
  ncbi_acc:
    name: ncbi_acc
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    range: string
    required: false
  ncbi_taxon:
    name: ncbi_taxon
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    range: float
    required: false
  is_partial:
    name: is_partial
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    range: string
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: float
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false

Induced

name: np_biosynthesis_source
from_schema: https://w3id.org/jgi/img_ext
attributes:
  cluster_id:
    name: cluster_id
    from_schema: https://w3id.org/jgi/img_ext
    alias: cluster_id
    owner: np_biosynthesis_source
    domain_of:
    - bc_ext_links
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: taxon_oid
    owner: np_biosynthesis_source
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_ec_count
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_smart_count
    - taxon_supfam_count
    - taxon_tigr_count
    - taxon_update_request
    range: integer
    required: false
  compound_oid:
    name: compound_oid
    from_schema: https://w3id.org/jgi/img_ext
    alias: compound_oid
    owner: np_biosynthesis_source
    domain_of:
    - img_compound
    - img_compound_activity
    - img_compound_aliases
    - img_compound_ext_links
    - img_compound_kegg_compounds
    - img_compound_meshd_tree
    - myimg_bio_cluster_np
    - natural_product
    - np_biosynthesis_source
    range: integer
    required: false
  ncbi_acc:
    name: ncbi_acc
    from_schema: https://w3id.org/jgi/img_ext
    alias: ncbi_acc
    owner: np_biosynthesis_source
    domain_of:
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    range: string
    required: false
  ncbi_taxon:
    name: ncbi_taxon
    from_schema: https://w3id.org/jgi/img_ext
    alias: ncbi_taxon
    owner: np_biosynthesis_source
    domain_of:
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    range: float
    required: false
  is_partial:
    name: is_partial
    from_schema: https://w3id.org/jgi/img_ext
    alias: is_partial
    owner: np_biosynthesis_source
    domain_of:
    - myimg_bio_cluster_np
    - np_biosynthesis_source
    range: string
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: np_biosynthesis_source
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: float
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: np_biosynthesis_source
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false