Class: PathwayNetwork

URI: img_ext:PathwayNetwork

classDiagram class PathwayNetwork click PathwayNetwork href "../PathwayNetwork/" PathwayNetwork : add_date PathwayNetwork : comments PathwayNetwork : description PathwayNetwork : eqn_grammer PathwayNetwork : image_id PathwayNetwork : mod_date PathwayNetwork : modified_by PathwayNetwork : network_name PathwayNetwork : network_oid

Slots

Name	Cardinality and Range	Inheritance
network_oid	0..1 Integer	direct
network_name	0..1 String	direct
eqn_grammer	0..1 String	direct
description	0..1 String	direct
comments	0..1 String	direct
image_id	0..1 String	direct
add_date	0..1 Datetime	direct
mod_date	0..1 Datetime	direct
modified_by	0..1 Integer	direct

Usages

used by	used in	type	used
ImgReactionAssocNetworks	network	range	PathwayNetwork
PathwayNetworkCComponents	network_oid	range	PathwayNetwork
PathwayNetworkImgPathways	network_oid	range	PathwayNetwork
PathwayNetworkParents	network_oid	range	PathwayNetwork
PathwayNetworkParents	parent	range	PathwayNetwork
PathwayNetworkPartsLists	network_oid	range	PathwayNetwork
PathwayNetworkTComponents	network_oid	range	PathwayNetwork
PathwayNetworkTaxons	network_oid	range	PathwayNetwork

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:PathwayNetwork
native	img_ext:PathwayNetwork

LinkML Source

Direct

name: pathway_network
from_schema: https://w3id.org/jgi/img_ext
attributes:
  network_oid:
    name: network_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - pathway_network
    - pathway_network_c_components
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_t_components
    - pathway_network_taxons
    range: integer
    required: false
  network_name:
    name: network_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - pathway_network
    range: string
    required: false
  eqn_grammer:
    name: eqn_grammer
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - pathway_network
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - assertioncv
    - componentcv
    - img_job_typecv
    - imgtermcv
    - mygene
    - pathway_network
    - phenotype_rule
    - public_set
    - statuscv
    - yesnocv
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  image_id:
    name: image_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    domain_of:
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false

Induced

name: pathway_network
from_schema: https://w3id.org/jgi/img_ext
attributes:
  network_oid:
    name: network_oid
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: network_oid
    owner: pathway_network
    domain_of:
    - pathway_network
    - pathway_network_c_components
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_t_components
    - pathway_network_taxons
    range: integer
    required: false
  network_name:
    name: network_name
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: network_name
    owner: pathway_network
    domain_of:
    - pathway_network
    range: string
    required: false
  eqn_grammer:
    name: eqn_grammer
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: eqn_grammer
    owner: pathway_network
    domain_of:
    - pathway_network
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_ext
    alias: description
    owner: pathway_network
    domain_of:
    - assertioncv
    - componentcv
    - img_job_typecv
    - imgtermcv
    - mygene
    - pathway_network
    - phenotype_rule
    - public_set
    - statuscv
    - yesnocv
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_ext
    alias: comments
    owner: pathway_network
    domain_of:
    - gene_function_history
    - gene_history
    - img_parts_list_history
    - img_pathway_assertions
    - img_pathway_history
    - img_reaction
    - img_reaction_assoc_networks
    - img_reaction_assoc_paths
    - img_reaction_assoc_rxns
    - img_term
    - img_term_history
    - myimg_bio_cluster_np
    - myimg_job
    - pathway_network
    range: string
    required: false
  image_id:
    name: image_id
    from_schema: https://w3id.org/jgi/img_ext
    rank: 1000
    alias: image_id
    owner: pathway_network
    domain_of:
    - pathway_network
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: add_date
    owner: pathway_network
    domain_of:
    - gene_function_history
    - gene_history
    - img_compound
    - img_parts_list
    - img_parts_list_backup
    - img_parts_list_history
    - img_pathway
    - img_pathway_history
    - img_reaction
    - img_term
    - img_term_history
    - img_term_synonyms
    - mygene
    - myimg_job
    - pathway_network
    - phenotype_rule
    - public_set
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: pathway_network
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: pathway_network
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false