Class: PathwayNetworkTaxons

URI: img_ext:PathwayNetworkTaxons

classDiagram class PathwayNetworkTaxons click PathwayNetworkTaxons href "../PathwayNetworkTaxons/" PathwayNetworkTaxons : confidence PathwayNetworkTaxons : evidence PathwayNetworkTaxons : mod_date PathwayNetworkTaxons : modified_by PathwayNetworkTaxons : network_oid PathwayNetworkTaxons --> "0..1" PathwayNetwork : network_oid click PathwayNetwork href "../PathwayNetwork/" PathwayNetworkTaxons : taxon

Slots

Name	Cardinality and Range	Description	Inheritance
network_oid	0..1 PathwayNetwork	Foreign key to pathway_network	direct
taxon	0..1 Integer		direct
confidence	0..1 String		direct
evidence	0..1 String		direct
mod_date	0..1 Datetime		direct
modified_by	0..1 Integer		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_ext

Mappings

Mapping Type	Mapped Value
self	img_ext:PathwayNetworkTaxons
native	img_ext:PathwayNetworkTaxons

LinkML Source

Direct

name: pathway_network_taxons
from_schema: https://w3id.org/jgi/img_ext
attributes:
  network_oid:
    name: network_oid
    description: Foreign key to pathway_network
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - pathway_network
    - pathway_network_c_components
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_t_components
    - pathway_network_taxons
    range: pathway_network
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false
  confidence:
    name: confidence
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_img_functions
    - img_pathway_taxons
    - pathway_network_taxons
    range: string
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false

Induced

name: pathway_network_taxons
from_schema: https://w3id.org/jgi/img_ext
attributes:
  network_oid:
    name: network_oid
    description: Foreign key to pathway_network
    from_schema: https://w3id.org/jgi/img_ext
    alias: network_oid
    owner: pathway_network_taxons
    domain_of:
    - pathway_network
    - pathway_network_c_components
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_t_components
    - pathway_network_taxons
    range: pathway_network
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_ext
    alias: taxon
    owner: pathway_network_taxons
    domain_of:
    - gene_function_history
    - gene_history
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene
    - natural_product
    - pathway_network_taxons
    - phenotype_rule_taxons
    range: integer
    required: false
  confidence:
    name: confidence
    from_schema: https://w3id.org/jgi/img_ext
    alias: confidence
    owner: pathway_network_taxons
    domain_of:
    - gene_img_functions
    - img_pathway_taxons
    - pathway_network_taxons
    range: string
    required: false
  evidence:
    name: evidence
    from_schema: https://w3id.org/jgi/img_ext
    alias: evidence
    owner: pathway_network_taxons
    domain_of:
    - gene_img_functions
    - img_pathway_assertions
    - img_pathway_taxons
    - mygene_terms
    - natural_product
    - pathway_network_taxons
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_ext
    alias: mod_date
    owner: pathway_network_taxons
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_ext
    alias: modified_by
    owner: pathway_network_taxons
    domain_of:
    - cell_localization
    - gene_img_functions
    - gene_myimg_functions
    - img_compound
    - img_compound_kegg_compounds
    - img_parts_list
    - img_parts_list_backup
    - img_pathway
    - img_pathway_assertions
    - img_pathway_taxons
    - img_reaction
    - img_term
    - img_term_synonyms
    - mygene
    - mygene_terms
    - myimg_bio_cluster_np
    - myimg_job
    - natural_product
    - np_biosynthesis_source
    - pathway_network
    - pathway_network_img_pathways
    - pathway_network_parents
    - pathway_network_parts_lists
    - pathway_network_taxons
    - phenotype_rule
    - phenotype_rule_taxons
    range: integer
    required: false