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img_gold

URI: https://w3id.org/jgi/img_gold

Name: img_gold

Classes

Class Description
GoldAnalysisProject
GoldAnalysisProjectGenbanks
GoldAnalysisProjectJgiAwardDois
GoldAnalysisProjectLookup2
GoldAnalysisProjectSraRuns
GoldAnalysisProjectUsers
GoldApGenbank
GoldApGenbankAnomalousReasons
GoldApPublications
GoldContactcv
GoldImgNatProdEntity
GoldMasterAnalysisProject
GoldMasterAnalysisProjectPublication
GoldMasterAnalysisProjectSraRun
GoldMasterAssembly
GoldMasterBiosample
GoldMasterContact
GoldMasterCvapStatus
GoldMasterCvbioticRelationship
GoldMasterCvcellArrangement
GoldMasterCvdisease
GoldMasterCvenergySource
GoldMasterCvhabitat
GoldMasterCvmetabolism
GoldMasterCvphenotype
GoldMasterCvrelevance
GoldMasterCvseqQuality
GoldMasterCvseqStatus
GoldMasterDwApDataUtilizationStatus
GoldMasterGenbank
GoldMasterHmpProject
GoldMasterInstitution
GoldMasterItsProposal
GoldMasterJournal
GoldMasterLonghurstCode
GoldMasterOrganism
GoldMasterOrganismBioticRel
GoldMasterOrganismCellArrangement
GoldMasterOrganismDisease
GoldMasterOrganismEnergySource
GoldMasterOrganismHabitat
GoldMasterOrganismMetabolism
GoldMasterOrganismPhenotype
GoldMasterPermission
GoldMasterProject
GoldMasterProjectAnalysisProject
GoldMasterProjectBiosample
GoldMasterProjectCollaborator
GoldMasterProjectGenomePublication
GoldMasterProjectRelevance
GoldMasterProjectSequencingCenter
GoldMasterProjectSequencingMethod
GoldMasterPublication
GoldMasterSequencingMethod
GoldMasterSraExperiment
GoldMasterStudy
GoldMasterTimestamp
GoldSequencingProject
GoldSpCellArrangement
GoldSpCollaborator
GoldSpDisease
GoldSpEnergySource
GoldSpGenomePublications
GoldSpHabitat
GoldSpMetabolism
GoldSpPhenotype
GoldSpRelevance
GoldSpSeqCenter
GoldSpSeqMethod
GoldSpSra
GoldSpStudyGoldId
GoldStudy

Slots

Slot Description
active
activity
add_date
altitude
altitude2
altitude_in_meters
altitude_in_meters2
analysis_product_name
analysis_project_id
analysis_project_name
analysis_project_type
anomalous_assembly
anomalous_reason
assembly_accession
assembly_method
award_doi
binning_method
bio_cluster_id
bioproject_accession
biosample_accession
biosample_gold_id
biosample_id
biotic_rel
biotic_relationship_id
caliban_id
cell_arrangement
cell_arrangement_id
cell_shape
chlorophyll_concentration
clade
comments
completion_date
contact_email
contact_id
contact_oid
contig_count
country
culture_type
cultured
cv_term
data_utilization_status
date_collected
depth
depth2
depth_in_meters
depth_in_meters2
description
disease
disease_id
display_name
doi
domain
ecosystem
ecosystem_category
ecosystem_subtype
ecosystem_type
ecotype
elevation
elevation2
elevation_in_meters
elevation_in_meters2
email
energy_source
energy_source_id
est_size
evidence
external
funding_program
funding_year
genbank_anomalous_reason
genbank_id
genbank_low_quality_annotation
genbank_low_quality_genome
gene_calling_method
gene_count
gene_primp_date
genome_size
genome_type
genus
geo_location
geographic_location
gold_analysis_project_id
gold_analysis_project_type
gold_id
gold_np_id
gold_phylogeny
gold_proposal_name
gpts_proposal_id
gram_stain
growth_temperature
habitat
habitat_id
hmp_id
host_body_site
host_body_subsite
host_gender
host_name
host_ncbi_taxid
host_taxonomy_id
id
img_analysis_complete
img_annotation_version
img_dataset_id
img_oid
img_taxon_id
img_taxon_oid
img_use
institution_id
is_assembled
is_decontamination
is_genbank_anomalous_assembly
is_gene_primp
is_img_annotation
is_mag_or_meg
is_ncbi_public
is_primary
is_public
iso_country
isolation
issue
its_analysis_project_id
its_analysis_project_name
its_annotation_at_id
its_assembly_at_id
its_data_utilization_status
its_product_name
its_proposal_id
its_proposal_name
its_sample_id
its_spid
jgi_award_doi
jgi_sequenced
journal_id
journal_name
last_synced
latitude
latitude_n
legacy_project_type
locus_tag
longhurst_code
longhurst_description
longitude
longitude_n
master_study_id
metabolism
metabolism_id
method
mod_date
modified_by
motility
mrn
name
ncbi_bioproject_accession
ncbi_bioproject_id
ncbi_biosample_accession
ncbi_class
ncbi_family
ncbi_genus
ncbi_kingdom
ncbi_locus_tag
ncbi_order
ncbi_phylum
ncbi_project_id
ncbi_species
ncbi_superkingdom
ncbi_tax_id
ncbi_taxon_id
ncbi_taxonomy_id
nitrate_concentration
np_id
orcid_id
organism_id
oxygen_concentration
oxygen_req
oxygen_requirement
page
patient_visit_number
permission_id
ph
ph1
ph2
phenotype
phenotype_id
phylogeny
pi_email
pi_name
pipeline_annotation_method
pipeline_version
pm_email
pm_name
pmo_project_id
pressure
project_id
project_name
project_oid
project_status
proport_isolation
proport_ocean
proport_station
proport_woa_dissolved_oxygen
proport_woa_nitrate
proport_woa_phosphate
proport_woa_salinity
proport_woa_silicate
proport_woa_temperature
proposal_name
publication_date
publication_id
pubmed_id
reference_ap_id
reference_gold_ap_id
reference_gold_id
reference_img_experiment_id
reference_img_oid
relevance
relevance_id
replaces_ap_id
replicate_num
review_status
role
salinity
salinity_concentration
sample_body_site
sample_body_subsite
sample_collect_temp
sample_collection_day
sample_collection_month
sample_collection_site
sample_collection_temperature
sample_collection_year
sample_isolation_country_id
sample_oid
scaffold_count
seq_method
seq_quality
seq_status
sequencing_depth
sequencing_method_id
sequencing_quality
sequencing_quality_id
sequencing_status
sequencing_status_id
sequencing_strategy
sp_gold_id
species
specific_ecosystem
specimen
sporulation
sra_experiment_id
sra_id
sra_run
sra_run_id
status
status_id
strain
study_gold_id
study_id
study_name
submission_id
submission_type
submitter_contact_oid
submitter_email
subsurface_depth
subsurface_depth1
subsurface_depth2
subsurface_depth_in_meters
subsurface_depth_in_meters2
temp_range
temperature_range
term
title
type
type_strain
uncultured_type
url
user_role
viral_group
viral_subgroup
visibility
visit_num
volume

Enumerations

Enumeration Description

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description