Class: GoldAnalysisProject

URI: img_gold:GoldAnalysisProject

classDiagram class GoldAnalysisProject click GoldAnalysisProject href "../GoldAnalysisProject/" GoldAnalysisProject : analysis_product_name GoldAnalysisProject : analysis_project_name GoldAnalysisProject : assembly_method GoldAnalysisProject : binning_method GoldAnalysisProject : caliban_id GoldAnalysisProject : comments GoldAnalysisProject : completion_date GoldAnalysisProject : contig_count GoldAnalysisProject : culture_type GoldAnalysisProject : cultured GoldAnalysisProject : domain GoldAnalysisProject : ecosystem GoldAnalysisProject : ecosystem_category GoldAnalysisProject : ecosystem_subtype GoldAnalysisProject : ecosystem_type GoldAnalysisProject : external GoldAnalysisProject : genbank_low_quality_annotation GoldAnalysisProject : genbank_low_quality_genome GoldAnalysisProject : gene_calling_method GoldAnalysisProject : gene_count GoldAnalysisProject : gene_primp_date GoldAnalysisProject : genome_size GoldAnalysisProject : genome_type GoldAnalysisProject : genus GoldAnalysisProject : gold_analysis_project_id GoldAnalysisProject : gold_analysis_project_type GoldAnalysisProject : gold_id GoldAnalysisProject : gold_phylogeny GoldAnalysisProject : gold_proposal_name GoldAnalysisProject : img_analysis_complete GoldAnalysisProject : img_annotation_version GoldAnalysisProject : img_dataset_id GoldAnalysisProject : img_use GoldAnalysisProject : is_assembled GoldAnalysisProject : is_decontamination GoldAnalysisProject : is_genbank_anomalous_assembly GoldAnalysisProject : is_gene_primp GoldAnalysisProject : is_img_annotation GoldAnalysisProject : its_analysis_project_id GoldAnalysisProject : its_analysis_project_name GoldAnalysisProject : its_annotation_at_id GoldAnalysisProject : its_assembly_at_id GoldAnalysisProject : its_data_utilization_status GoldAnalysisProject : jgi_sequenced GoldAnalysisProject : locus_tag GoldAnalysisProject : mod_date GoldAnalysisProject : ncbi_class GoldAnalysisProject : ncbi_family GoldAnalysisProject : ncbi_genus GoldAnalysisProject : ncbi_order GoldAnalysisProject : ncbi_phylum GoldAnalysisProject : ncbi_species GoldAnalysisProject : ncbi_superkingdom GoldAnalysisProject : ncbi_tax_id GoldAnalysisProject : pi_email GoldAnalysisProject : pi_name GoldAnalysisProject : pipeline_version GoldAnalysisProject : reference_gold_ap_id GoldAnalysisProject : reference_gold_id GoldAnalysisProject : reference_img_experiment_id GoldAnalysisProject : reference_img_oid GoldAnalysisProject : review_status GoldAnalysisProject : scaffold_count GoldAnalysisProject : sequencing_depth GoldAnalysisProject : species GoldAnalysisProject : specific_ecosystem GoldAnalysisProject : specimen GoldAnalysisProject : status GoldAnalysisProject : strain GoldAnalysisProject : study_gold_id GoldAnalysisProject : submission_id GoldAnalysisProject : submission_type GoldAnalysisProject : submitter_contact_oid GoldAnalysisProject : submitter_email GoldAnalysisProject : uncultured_type GoldAnalysisProject : visibility

Slots

Name	Cardinality and Range	Inheritance
gold_analysis_project_id	0..1 Integer	direct
its_analysis_project_id	0..1 Integer	direct
analysis_project_name	0..1 String	direct
ncbi_tax_id	0..1 Integer	direct
img_dataset_id	0..1 Integer	direct
analysis_product_name	0..1 String	direct
visibility	0..1 String	direct
domain	0..1 String	direct
ncbi_phylum	0..1 String	direct
ncbi_class	0..1 String	direct
ncbi_order	0..1 String	direct
ncbi_family	0..1 String	direct
ncbi_genus	0..1 String	direct
ncbi_species	0..1 String	direct
gold_analysis_project_type	0..1 String	direct
gold_proposal_name	0..1 String	direct
ecosystem	0..1 String	direct
ecosystem_category	0..1 String	direct
ecosystem_subtype	0..1 String	direct
specific_ecosystem	0..1 String	direct
reference_img_oid	0..1 Integer	direct
pi_name	0..1 String	direct
pi_email	0..1 String	direct
submitter_contact_oid	0..1 Integer	direct
ecosystem_type	0..1 String	direct
specimen	0..1 String	direct
comments	0..1 String	direct
reference_img_experiment_id	0..1 Integer	direct
reference_gold_ap_id	0..1 Integer	direct
gold_id	0..1 String	direct
genome_size	0..1 Integer	direct
gene_count	0..1 Integer	direct
scaffold_count	0..1 Integer	direct
its_analysis_project_name	0..1 String	direct
contig_count	0..1 Integer	direct
genbank_low_quality_annotation	0..1 String	direct
genbank_low_quality_genome	0..1 String	direct
completion_date	0..1 Datetime	direct
binning_method	0..1 String	direct
gene_calling_method	0..1 String	direct
submission_id	0..1 Integer	direct
img_analysis_complete	0..1 String	direct
status	0..1 String	direct
is_gene_primp	0..1 String	direct
gene_primp_date	0..1 Datetime	direct
is_decontamination	0..1 String	direct
is_img_annotation	0..1 String	direct
its_annotation_at_id	0..1 Integer	direct
its_assembly_at_id	0..1 Integer	direct
is_assembled	0..1 String	direct
genome_type	0..1 String	direct
study_gold_id	0..1 String	direct
locus_tag	0..1 String	direct
cultured	0..1 String	direct
jgi_sequenced	0..1 String	direct
reference_gold_id	0..1 String	direct
strain	0..1 String	direct
mod_date	0..1 Datetime	direct
submission_type	0..1 String	direct
submitter_email	0..1 String	direct
review_status	0..1 String	direct
caliban_id	0..1 Integer	direct
assembly_method	0..1 String	direct
genus	0..1 String	direct
species	0..1 String	direct
sequencing_depth	0..1 String	direct
img_use	0..1 String	direct
gold_phylogeny	0..1 String	direct
uncultured_type	0..1 String	direct
culture_type	0..1 String	direct
ncbi_superkingdom	0..1 String	direct
external	0..1 String	direct
pipeline_version	0..1 String	direct
its_data_utilization_status	0..1 String	direct
is_genbank_anomalous_assembly	0..1 String	direct
img_annotation_version	0..1 String	direct

Usages

used by	used in	type	used
GoldAnalysisProjectLookup2	gold_id	range	GoldAnalysisProject
GoldAnalysisProjectUsers	gold_id	range	GoldAnalysisProject

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_gold

Mappings

Mapping Type	Mapped Value
self	img_gold:GoldAnalysisProject
native	img_gold:GoldAnalysisProject

LinkML Source

Direct

name: gold_analysis_project
from_schema: https://w3id.org/jgi/img_gold
attributes:
  gold_analysis_project_id:
    name: gold_analysis_project_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_ap_genbank
    range: integer
    required: false
  its_analysis_project_id:
    name: its_analysis_project_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  analysis_project_name:
    name: analysis_project_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  ncbi_tax_id:
    name: ncbi_tax_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  img_dataset_id:
    name: img_dataset_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  analysis_product_name:
    name: analysis_product_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  visibility:
    name: visibility
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  gold_analysis_project_type:
    name: gold_analysis_project_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  gold_proposal_name:
    name: gold_proposal_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  reference_img_oid:
    name: reference_img_oid
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  pi_name:
    name: pi_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  pi_email:
    name: pi_email
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  submitter_contact_oid:
    name: submitter_contact_oid
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specimen:
    name: specimen
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  reference_img_experiment_id:
    name: reference_img_experiment_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  reference_gold_ap_id:
    name: reference_gold_ap_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    range: string
    required: false
  genome_size:
    name: genome_size
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  its_analysis_project_name:
    name: its_analysis_project_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  contig_count:
    name: contig_count
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  genbank_low_quality_annotation:
    name: genbank_low_quality_annotation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  genbank_low_quality_genome:
    name: genbank_low_quality_genome
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  completion_date:
    name: completion_date
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: datetime
    required: false
  binning_method:
    name: binning_method
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  img_analysis_complete:
    name: img_analysis_complete
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  is_gene_primp:
    name: is_gene_primp
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  gene_primp_date:
    name: gene_primp_date
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: datetime
    required: false
  is_decontamination:
    name: is_decontamination
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  is_img_annotation:
    name: is_img_annotation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  its_annotation_at_id:
    name: its_annotation_at_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  its_assembly_at_id:
    name: its_assembly_at_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  is_assembled:
    name: is_assembled
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  genome_type:
    name: genome_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  study_gold_id:
    name: study_gold_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_sp_study_gold_id
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  cultured:
    name: cultured
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  jgi_sequenced:
    name: jgi_sequenced
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  reference_gold_id:
    name: reference_gold_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: datetime
    required: false
  submission_type:
    name: submission_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  submitter_email:
    name: submitter_email
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  review_status:
    name: review_status
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  caliban_id:
    name: caliban_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_users
    - gold_master_contact
    range: integer
    required: false
  assembly_method:
    name: assembly_method
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sequencing_depth:
    name: sequencing_depth
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  img_use:
    name: img_use
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  gold_phylogeny:
    name: gold_phylogeny
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  uncultured_type:
    name: uncultured_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  culture_type:
    name: culture_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_superkingdom:
    name: ncbi_superkingdom
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  external:
    name: external
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  pipeline_version:
    name: pipeline_version
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  its_data_utilization_status:
    name: its_data_utilization_status
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_project
    - gold_sequencing_project
    range: string
    required: false
  is_genbank_anomalous_assembly:
    name: is_genbank_anomalous_assembly
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  img_annotation_version:
    name: img_annotation_version
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false

Induced

name: gold_analysis_project
from_schema: https://w3id.org/jgi/img_gold
attributes:
  gold_analysis_project_id:
    name: gold_analysis_project_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gold_analysis_project_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_ap_genbank
    range: integer
    required: false
  its_analysis_project_id:
    name: its_analysis_project_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: its_analysis_project_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  analysis_project_name:
    name: analysis_project_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: analysis_project_name
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  ncbi_tax_id:
    name: ncbi_tax_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_tax_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  img_dataset_id:
    name: img_dataset_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: img_dataset_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  analysis_product_name:
    name: analysis_product_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: analysis_product_name
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  visibility:
    name: visibility
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: visibility
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: domain
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_phylum
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_class
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_order
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_family
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_genus
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_species
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  gold_analysis_project_type:
    name: gold_analysis_project_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gold_analysis_project_type
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  gold_proposal_name:
    name: gold_proposal_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gold_proposal_name
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ecosystem
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ecosystem_category
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ecosystem_subtype
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: specific_ecosystem
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  reference_img_oid:
    name: reference_img_oid
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: reference_img_oid
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  pi_name:
    name: pi_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: pi_name
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  pi_email:
    name: pi_email
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: pi_email
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  submitter_contact_oid:
    name: submitter_contact_oid
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: submitter_contact_oid
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ecosystem_type
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specimen:
    name: specimen
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: specimen
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: comments
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  reference_img_experiment_id:
    name: reference_img_experiment_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: reference_img_experiment_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  reference_gold_ap_id:
    name: reference_gold_ap_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: reference_gold_ap_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gold_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    range: string
    required: false
  genome_size:
    name: genome_size
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: genome_size
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gene_count
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: scaffold_count
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  its_analysis_project_name:
    name: its_analysis_project_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: its_analysis_project_name
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  contig_count:
    name: contig_count
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: contig_count
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  genbank_low_quality_annotation:
    name: genbank_low_quality_annotation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: genbank_low_quality_annotation
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  genbank_low_quality_genome:
    name: genbank_low_quality_genome
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: genbank_low_quality_genome
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  completion_date:
    name: completion_date
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: completion_date
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: datetime
    required: false
  binning_method:
    name: binning_method
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: binning_method
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gene_calling_method
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: submission_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  img_analysis_complete:
    name: img_analysis_complete
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: img_analysis_complete
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: status
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  is_gene_primp:
    name: is_gene_primp
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: is_gene_primp
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  gene_primp_date:
    name: gene_primp_date
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gene_primp_date
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: datetime
    required: false
  is_decontamination:
    name: is_decontamination
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: is_decontamination
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  is_img_annotation:
    name: is_img_annotation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: is_img_annotation
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  its_annotation_at_id:
    name: its_annotation_at_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: its_annotation_at_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: integer
    required: false
  its_assembly_at_id:
    name: its_assembly_at_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: its_assembly_at_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: integer
    required: false
  is_assembled:
    name: is_assembled
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: is_assembled
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  genome_type:
    name: genome_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: genome_type
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  study_gold_id:
    name: study_gold_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: study_gold_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_sp_study_gold_id
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: locus_tag
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  cultured:
    name: cultured
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: cultured
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  jgi_sequenced:
    name: jgi_sequenced
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: jgi_sequenced
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  reference_gold_id:
    name: reference_gold_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: reference_gold_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: strain
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: mod_date
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: datetime
    required: false
  submission_type:
    name: submission_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: submission_type
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  submitter_email:
    name: submitter_email
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: submitter_email
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  review_status:
    name: review_status
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: review_status
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  caliban_id:
    name: caliban_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: caliban_id
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_users
    - gold_master_contact
    range: integer
    required: false
  assembly_method:
    name: assembly_method
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: assembly_method
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: genus
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: species
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sequencing_depth:
    name: sequencing_depth
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sequencing_depth
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_sequencing_project
    range: string
    required: false
  img_use:
    name: img_use
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: img_use
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  gold_phylogeny:
    name: gold_phylogeny
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gold_phylogeny
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  uncultured_type:
    name: uncultured_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: uncultured_type
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  culture_type:
    name: culture_type
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: culture_type
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_superkingdom:
    name: ncbi_superkingdom
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_superkingdom
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  external:
    name: external
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: external
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false
  pipeline_version:
    name: pipeline_version
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: pipeline_version
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  its_data_utilization_status:
    name: its_data_utilization_status
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: its_data_utilization_status
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_project
    - gold_sequencing_project
    range: string
    required: false
  is_genbank_anomalous_assembly:
    name: is_genbank_anomalous_assembly
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: is_genbank_anomalous_assembly
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    range: string
    required: false
  img_annotation_version:
    name: img_annotation_version
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: img_annotation_version
    owner: gold_analysis_project
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    range: string
    required: false