Class: GoldMasterAnalysisProject
URI: img_gold:GoldMasterAnalysisProject
classDiagram
class GoldMasterAnalysisProject
click GoldMasterAnalysisProject href "../GoldMasterAnalysisProject/"
GoldMasterAnalysisProject : analysis_project_id
GoldMasterAnalysisProject : analysis_project_name
GoldMasterAnalysisProject : analysis_project_type
GoldMasterAnalysisProject : binning_method
GoldMasterAnalysisProject : comments
GoldMasterAnalysisProject : completion_date
GoldMasterAnalysisProject : contig_count
GoldMasterAnalysisProject : ecosystem
GoldMasterAnalysisProject : ecosystem_category
GoldMasterAnalysisProject : ecosystem_subtype
GoldMasterAnalysisProject : ecosystem_type
GoldMasterAnalysisProject : est_size
GoldMasterAnalysisProject : external
GoldMasterAnalysisProject : genbank_low_quality_annotation
GoldMasterAnalysisProject : gene_calling_method
GoldMasterAnalysisProject : gene_count
GoldMasterAnalysisProject : gold_id
GoldMasterAnalysisProject : img_annotation_version
GoldMasterAnalysisProject : img_taxon_id
GoldMasterAnalysisProject : img_use
GoldMasterAnalysisProject : is_decontamination
GoldMasterAnalysisProject : is_mag_or_meg
GoldMasterAnalysisProject : is_primary
GoldMasterAnalysisProject : is_public
GoldMasterAnalysisProject : its_analysis_project_id
GoldMasterAnalysisProject : its_analysis_project_name
GoldMasterAnalysisProject : its_annotation_at_id
GoldMasterAnalysisProject : its_product_name
GoldMasterAnalysisProject : mod_date
GoldMasterAnalysisProject : organism_id
GoldMasterAnalysisProject : pipeline_annotation_method
GoldMasterAnalysisProject : reference_ap_id
GoldMasterAnalysisProject : replaces_ap_id
GoldMasterAnalysisProject : review_status
GoldMasterAnalysisProject : scaffold_count
GoldMasterAnalysisProject : sequencing_depth
GoldMasterAnalysisProject : specific_ecosystem
GoldMasterAnalysisProject : specimen
GoldMasterAnalysisProject : status_id
GoldMasterAnalysisProject : study_id
GoldMasterAnalysisProject : submission_id
Slots
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_gold
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_gold:GoldMasterAnalysisProject |
| native | img_gold:GoldMasterAnalysisProject |
LinkML Source
Direct
name: gold_master_analysis_project
from_schema: https://w3id.org/jgi/img_gold
attributes:
analysis_project_id:
name: analysis_project_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
- gold_master_analysis_project_publication
- gold_master_analysis_project_sra_run
- gold_master_assembly
- gold_master_dw_ap_data_utilization_status
- gold_master_genbank
- gold_master_permission
- gold_master_project_analysis_project
range: float
required: false
gold_id:
name: gold_id
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_project
- gold_master_study
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
range: string
required: false
organism_id:
name: organism_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
- gold_master_organism
- gold_master_organism_biotic_rel
- gold_master_organism_cell_arrangement
- gold_master_organism_disease
- gold_master_organism_energy_source
- gold_master_organism_habitat
- gold_master_organism_metabolism
- gold_master_organism_phenotype
- gold_master_permission
- gold_master_project
range: float
required: false
external:
name: external
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
its_analysis_project_id:
name: its_analysis_project_id
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
analysis_project_name:
name: analysis_project_name
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
img_taxon_id:
name: img_taxon_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: float
required: false
its_product_name:
name: its_product_name
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: string
required: false
is_public:
name: is_public
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_project
- gold_master_study
range: string
required: false
analysis_project_type:
name: analysis_project_type
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: string
required: false
ecosystem:
name: ecosystem
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
ecosystem_category:
name: ecosystem_category
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
ecosystem_type:
name: ecosystem_type
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
ecosystem_subtype:
name: ecosystem_subtype
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
specific_ecosystem:
name: specific_ecosystem
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
specimen:
name: specimen
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_sequencing_project
range: string
required: false
est_size:
name: est_size
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: float
required: false
gene_count:
name: gene_count
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
scaffold_count:
name: scaffold_count
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
its_analysis_project_name:
name: its_analysis_project_name
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
contig_count:
name: contig_count
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
genbank_low_quality_annotation:
name: genbank_low_quality_annotation
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
completion_date:
name: completion_date
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: datetime
required: false
binning_method:
name: binning_method
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
gene_calling_method:
name: gene_calling_method
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
submission_id:
name: submission_id
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
status_id:
name: status_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: float
required: false
is_decontamination:
name: is_decontamination
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
its_annotation_at_id:
name: its_annotation_at_id
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
study_id:
name: study_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
- gold_master_permission
- gold_master_study
- gold_study
range: float
required: false
reference_ap_id:
name: reference_ap_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: float
required: false
mod_date:
name: mod_date
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_project
- gold_master_study
- gold_sequencing_project
- gold_study
range: datetime
required: false
is_primary:
name: is_primary
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: string
required: false
review_status:
name: review_status
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
sequencing_depth:
name: sequencing_depth
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_sequencing_project
range: string
required: false
img_use:
name: img_use
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
pipeline_annotation_method:
name: pipeline_annotation_method
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: string
required: false
replaces_ap_id:
name: replaces_ap_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: float
required: false
img_annotation_version:
name: img_annotation_version
from_schema: https://w3id.org/jgi/img_gold
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
is_mag_or_meg:
name: is_mag_or_meg
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
domain_of:
- gold_master_analysis_project
range: string
required: false
Induced
name: gold_master_analysis_project
from_schema: https://w3id.org/jgi/img_gold
attributes:
analysis_project_id:
name: analysis_project_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: analysis_project_id
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
- gold_master_analysis_project_publication
- gold_master_analysis_project_sra_run
- gold_master_assembly
- gold_master_dw_ap_data_utilization_status
- gold_master_genbank
- gold_master_permission
- gold_master_project_analysis_project
range: float
required: false
gold_id:
name: gold_id
from_schema: https://w3id.org/jgi/img_gold
alias: gold_id
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_project
- gold_master_study
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
range: string
required: false
organism_id:
name: organism_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: organism_id
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
- gold_master_organism
- gold_master_organism_biotic_rel
- gold_master_organism_cell_arrangement
- gold_master_organism_disease
- gold_master_organism_energy_source
- gold_master_organism_habitat
- gold_master_organism_metabolism
- gold_master_organism_phenotype
- gold_master_permission
- gold_master_project
range: float
required: false
external:
name: external
from_schema: https://w3id.org/jgi/img_gold
alias: external
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
its_analysis_project_id:
name: its_analysis_project_id
from_schema: https://w3id.org/jgi/img_gold
alias: its_analysis_project_id
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
analysis_project_name:
name: analysis_project_name
from_schema: https://w3id.org/jgi/img_gold
alias: analysis_project_name
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
img_taxon_id:
name: img_taxon_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: img_taxon_id
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: float
required: false
its_product_name:
name: its_product_name
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: its_product_name
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: string
required: false
is_public:
name: is_public
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: is_public
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_project
- gold_master_study
range: string
required: false
analysis_project_type:
name: analysis_project_type
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: analysis_project_type
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: string
required: false
ecosystem:
name: ecosystem
from_schema: https://w3id.org/jgi/img_gold
alias: ecosystem
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
ecosystem_category:
name: ecosystem_category
from_schema: https://w3id.org/jgi/img_gold
alias: ecosystem_category
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
ecosystem_type:
name: ecosystem_type
from_schema: https://w3id.org/jgi/img_gold
alias: ecosystem_type
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
ecosystem_subtype:
name: ecosystem_subtype
from_schema: https://w3id.org/jgi/img_gold
alias: ecosystem_subtype
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
specific_ecosystem:
name: specific_ecosystem
from_schema: https://w3id.org/jgi/img_gold
alias: specific_ecosystem
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_biosample
- gold_master_organism
- gold_master_study
- gold_sequencing_project
- gold_study
range: string
required: false
specimen:
name: specimen
from_schema: https://w3id.org/jgi/img_gold
alias: specimen
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/img_gold
alias: comments
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_sequencing_project
range: string
required: false
est_size:
name: est_size
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: est_size
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: float
required: false
gene_count:
name: gene_count
from_schema: https://w3id.org/jgi/img_gold
alias: gene_count
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
scaffold_count:
name: scaffold_count
from_schema: https://w3id.org/jgi/img_gold
alias: scaffold_count
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
its_analysis_project_name:
name: its_analysis_project_name
from_schema: https://w3id.org/jgi/img_gold
alias: its_analysis_project_name
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
contig_count:
name: contig_count
from_schema: https://w3id.org/jgi/img_gold
alias: contig_count
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
genbank_low_quality_annotation:
name: genbank_low_quality_annotation
from_schema: https://w3id.org/jgi/img_gold
alias: genbank_low_quality_annotation
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
completion_date:
name: completion_date
from_schema: https://w3id.org/jgi/img_gold
alias: completion_date
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: datetime
required: false
binning_method:
name: binning_method
from_schema: https://w3id.org/jgi/img_gold
alias: binning_method
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
gene_calling_method:
name: gene_calling_method
from_schema: https://w3id.org/jgi/img_gold
alias: gene_calling_method
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
submission_id:
name: submission_id
from_schema: https://w3id.org/jgi/img_gold
alias: submission_id
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
status_id:
name: status_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: status_id
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: float
required: false
is_decontamination:
name: is_decontamination
from_schema: https://w3id.org/jgi/img_gold
alias: is_decontamination
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
its_annotation_at_id:
name: its_annotation_at_id
from_schema: https://w3id.org/jgi/img_gold
alias: its_annotation_at_id
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: float
required: false
study_id:
name: study_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: study_id
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
- gold_master_permission
- gold_master_study
- gold_study
range: float
required: false
reference_ap_id:
name: reference_ap_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: reference_ap_id
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: float
required: false
mod_date:
name: mod_date
from_schema: https://w3id.org/jgi/img_gold
alias: mod_date
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_master_project
- gold_master_study
- gold_sequencing_project
- gold_study
range: datetime
required: false
is_primary:
name: is_primary
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: is_primary
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: string
required: false
review_status:
name: review_status
from_schema: https://w3id.org/jgi/img_gold
alias: review_status
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
sequencing_depth:
name: sequencing_depth
from_schema: https://w3id.org/jgi/img_gold
alias: sequencing_depth
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
- gold_sequencing_project
range: string
required: false
img_use:
name: img_use
from_schema: https://w3id.org/jgi/img_gold
alias: img_use
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
pipeline_annotation_method:
name: pipeline_annotation_method
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: pipeline_annotation_method
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: string
required: false
replaces_ap_id:
name: replaces_ap_id
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: replaces_ap_id
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: float
required: false
img_annotation_version:
name: img_annotation_version
from_schema: https://w3id.org/jgi/img_gold
alias: img_annotation_version
owner: gold_master_analysis_project
domain_of:
- gold_analysis_project
- gold_master_analysis_project
range: string
required: false
is_mag_or_meg:
name: is_mag_or_meg
from_schema: https://w3id.org/jgi/img_gold
rank: 1000
alias: is_mag_or_meg
owner: gold_master_analysis_project
domain_of:
- gold_master_analysis_project
range: string
required: false