Class: GoldMasterBiosample

URI: img_gold:GoldMasterBiosample

classDiagram class GoldMasterBiosample click GoldMasterBiosample href "../GoldMasterBiosample/" GoldMasterBiosample : active GoldMasterBiosample : altitude GoldMasterBiosample : altitude2 GoldMasterBiosample : biosample_id GoldMasterBiosample : chlorophyll_concentration GoldMasterBiosample : depth GoldMasterBiosample : depth2 GoldMasterBiosample : ecosystem GoldMasterBiosample : ecosystem_category GoldMasterBiosample : ecosystem_subtype GoldMasterBiosample : ecosystem_type GoldMasterBiosample : elevation GoldMasterBiosample : elevation2 GoldMasterBiosample : geographic_location GoldMasterBiosample : gold_id GoldMasterBiosample : growth_temperature GoldMasterBiosample : habitat GoldMasterBiosample : host_body_site GoldMasterBiosample : host_body_subsite GoldMasterBiosample : host_gender GoldMasterBiosample : host_name GoldMasterBiosample : host_taxonomy_id GoldMasterBiosample : is_public GoldMasterBiosample : latitude GoldMasterBiosample : longhurst_code GoldMasterBiosample : longitude GoldMasterBiosample : mrn GoldMasterBiosample : ncbi_taxonomy_id GoldMasterBiosample : nitrate_concentration GoldMasterBiosample : oxygen_concentration GoldMasterBiosample : patient_visit_number GoldMasterBiosample : ph1 GoldMasterBiosample : ph2 GoldMasterBiosample : pressure GoldMasterBiosample : proport_isolation GoldMasterBiosample : proport_ocean GoldMasterBiosample : proport_station GoldMasterBiosample : proport_woa_dissolved_oxygen GoldMasterBiosample : proport_woa_nitrate GoldMasterBiosample : proport_woa_phosphate GoldMasterBiosample : proport_woa_salinity GoldMasterBiosample : proport_woa_silicate GoldMasterBiosample : proport_woa_temperature GoldMasterBiosample : salinity_concentration GoldMasterBiosample : sample_collection_day GoldMasterBiosample : sample_collection_month GoldMasterBiosample : sample_collection_site GoldMasterBiosample : sample_collection_year GoldMasterBiosample : sample_isolation_country_id GoldMasterBiosample : specific_ecosystem GoldMasterBiosample : subsurface_depth GoldMasterBiosample : subsurface_depth2

Slots

Name	Cardinality and Range	Inheritance
biosample_id	0..1 Float	direct
gold_id	0..1 String	direct
active	0..1 String	direct
is_public	0..1 String	direct
ncbi_taxonomy_id	0..1 Float	direct
sample_collection_site	0..1 String	direct
sample_isolation_country_id	0..1 Float	direct
sample_collection_year	0..1 Float	direct
sample_collection_month	0..1 Float	direct
sample_collection_day	0..1 Float	direct
geographic_location	0..1 String	direct
latitude	0..1 Float	direct
longitude	0..1 Float	direct
host_name	0..1 String	direct
host_gender	0..1 String	direct
host_taxonomy_id	0..1 Float	direct
ecosystem	0..1 String	direct
ecosystem_category	0..1 String	direct
ecosystem_type	0..1 String	direct
ecosystem_subtype	0..1 String	direct
specific_ecosystem	0..1 String	direct
host_body_site	0..1 String	direct
host_body_subsite	0..1 String	direct
mrn	0..1 String	direct
patient_visit_number	0..1 Float	direct
longhurst_code	0..1 String	direct
proport_ocean	0..1 String	direct
proport_isolation	0..1 String	direct
proport_station	0..1 String	direct
proport_woa_temperature	0..1 Float	direct
proport_woa_salinity	0..1 Float	direct
proport_woa_dissolved_oxygen	0..1 Float	direct
proport_woa_silicate	0..1 Float	direct
proport_woa_phosphate	0..1 Float	direct
proport_woa_nitrate	0..1 Float	direct
growth_temperature	0..1 Float	direct
pressure	0..1 String	direct
chlorophyll_concentration	0..1 String	direct
oxygen_concentration	0..1 String	direct
salinity_concentration	0..1 String	direct
nitrate_concentration	0..1 String	direct
ph1	0..1 Float	direct
ph2	0..1 Float	direct
depth	0..1 Float	direct
depth2	0..1 Float	direct
altitude	0..1 Float	direct
altitude2	0..1 Float	direct
elevation	0..1 Float	direct
elevation2	0..1 Float	direct
subsurface_depth	0..1 Float	direct
subsurface_depth2	0..1 Float	direct
habitat	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_gold

Mappings

Mapping Type	Mapped Value
self	img_gold:GoldMasterBiosample
native	img_gold:GoldMasterBiosample

LinkML Source

Direct

name: gold_master_biosample
from_schema: https://w3id.org/jgi/img_gold
attributes:
  biosample_id:
    name: biosample_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_permission
    - gold_master_project_biosample
    range: float
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    range: string
    required: false
  active:
    name: active
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  ncbi_taxonomy_id:
    name: ncbi_taxonomy_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  sample_collection_site:
    name: sample_collection_site
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  sample_isolation_country_id:
    name: sample_isolation_country_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  sample_collection_year:
    name: sample_collection_year
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  sample_collection_month:
    name: sample_collection_month
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  sample_collection_day:
    name: sample_collection_day
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  geographic_location:
    name: geographic_location
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  host_name:
    name: host_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  host_gender:
    name: host_gender
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_sequencing_project
    range: string
    required: false
  host_taxonomy_id:
    name: host_taxonomy_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  host_body_site:
    name: host_body_site
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  host_body_subsite:
    name: host_body_subsite
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  mrn:
    name: mrn
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_sequencing_project
    range: string
    required: false
  patient_visit_number:
    name: patient_visit_number
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  longhurst_code:
    name: longhurst_code
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_sequencing_project
    range: string
    required: false
  proport_ocean:
    name: proport_ocean
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_isolation:
    name: proport_isolation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_station:
    name: proport_station
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_woa_temperature:
    name: proport_woa_temperature
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_salinity:
    name: proport_woa_salinity
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_dissolved_oxygen:
    name: proport_woa_dissolved_oxygen
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_silicate:
    name: proport_woa_silicate
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_phosphate:
    name: proport_woa_phosphate
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_nitrate:
    name: proport_woa_nitrate
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  growth_temperature:
    name: growth_temperature
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  pressure:
    name: pressure
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  chlorophyll_concentration:
    name: chlorophyll_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  oxygen_concentration:
    name: oxygen_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  salinity_concentration:
    name: salinity_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  nitrate_concentration:
    name: nitrate_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ph1:
    name: ph1
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  ph2:
    name: ph2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  depth2:
    name: depth2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  altitude2:
    name: altitude2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation:
    name: elevation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation2:
    name: elevation2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  subsurface_depth:
    name: subsurface_depth
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  subsurface_depth2:
    name: subsurface_depth2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  habitat:
    name: habitat
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_biosample
    - gold_sp_habitat
    range: string
    required: false

Induced

name: gold_master_biosample
from_schema: https://w3id.org/jgi/img_gold
attributes:
  biosample_id:
    name: biosample_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: biosample_id
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_permission
    - gold_master_project_biosample
    range: float
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_gold
    alias: gold_id
    owner: gold_master_biosample
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    range: string
    required: false
  active:
    name: active
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: active
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_gold
    alias: is_public
    owner: gold_master_biosample
    domain_of:
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  ncbi_taxonomy_id:
    name: ncbi_taxonomy_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_taxonomy_id
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  sample_collection_site:
    name: sample_collection_site
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sample_collection_site
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  sample_isolation_country_id:
    name: sample_isolation_country_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sample_isolation_country_id
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  sample_collection_year:
    name: sample_collection_year
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sample_collection_year
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  sample_collection_month:
    name: sample_collection_month
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sample_collection_month
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  sample_collection_day:
    name: sample_collection_day
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sample_collection_day
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  geographic_location:
    name: geographic_location
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: geographic_location
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: latitude
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: longitude
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  host_name:
    name: host_name
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: host_name
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  host_gender:
    name: host_gender
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: host_gender
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_sequencing_project
    range: string
    required: false
  host_taxonomy_id:
    name: host_taxonomy_id
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: host_taxonomy_id
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem
    owner: gold_master_biosample
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem_category
    owner: gold_master_biosample
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem_type
    owner: gold_master_biosample
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem_subtype
    owner: gold_master_biosample
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    alias: specific_ecosystem
    owner: gold_master_biosample
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  host_body_site:
    name: host_body_site
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: host_body_site
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  host_body_subsite:
    name: host_body_subsite
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: host_body_subsite
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  mrn:
    name: mrn
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: mrn
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_sequencing_project
    range: string
    required: false
  patient_visit_number:
    name: patient_visit_number
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: patient_visit_number
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  longhurst_code:
    name: longhurst_code
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: longhurst_code
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_sequencing_project
    range: string
    required: false
  proport_ocean:
    name: proport_ocean
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_ocean
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_isolation:
    name: proport_isolation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_isolation
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_station:
    name: proport_station
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_station
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_woa_temperature:
    name: proport_woa_temperature
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_woa_temperature
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_salinity:
    name: proport_woa_salinity
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_woa_salinity
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_dissolved_oxygen:
    name: proport_woa_dissolved_oxygen
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_woa_dissolved_oxygen
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_silicate:
    name: proport_woa_silicate
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_woa_silicate
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_phosphate:
    name: proport_woa_phosphate
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_woa_phosphate
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_nitrate:
    name: proport_woa_nitrate
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: proport_woa_nitrate
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  growth_temperature:
    name: growth_temperature
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: growth_temperature
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  pressure:
    name: pressure
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: pressure
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  chlorophyll_concentration:
    name: chlorophyll_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: chlorophyll_concentration
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  oxygen_concentration:
    name: oxygen_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: oxygen_concentration
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  salinity_concentration:
    name: salinity_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: salinity_concentration
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  nitrate_concentration:
    name: nitrate_concentration
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: nitrate_concentration
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ph1:
    name: ph1
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ph1
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  ph2:
    name: ph2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ph2
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: depth
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  depth2:
    name: depth2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: depth2
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: altitude
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  altitude2:
    name: altitude2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: altitude2
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation:
    name: elevation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: elevation
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation2:
    name: elevation2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: elevation2
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  subsurface_depth:
    name: subsurface_depth
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: subsurface_depth
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    range: float
    required: false
  subsurface_depth2:
    name: subsurface_depth2
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: subsurface_depth2
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  habitat:
    name: habitat
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: habitat
    owner: gold_master_biosample
    domain_of:
    - gold_master_biosample
    - gold_sp_habitat
    range: string
    required: false