Class: GoldMasterOrganism

URI: img_gold:GoldMasterOrganism

classDiagram class GoldMasterOrganism click GoldMasterOrganism href "../GoldMasterOrganism/" GoldMasterOrganism : active GoldMasterOrganism : altitude GoldMasterOrganism : altitude2 GoldMasterOrganism : cell_shape GoldMasterOrganism : chlorophyll_concentration GoldMasterOrganism : clade GoldMasterOrganism : culture_type GoldMasterOrganism : cultured GoldMasterOrganism : depth GoldMasterOrganism : depth2 GoldMasterOrganism : domain GoldMasterOrganism : ecosystem GoldMasterOrganism : ecosystem_category GoldMasterOrganism : ecosystem_subtype GoldMasterOrganism : ecosystem_type GoldMasterOrganism : ecotype GoldMasterOrganism : elevation GoldMasterOrganism : elevation2 GoldMasterOrganism : genus GoldMasterOrganism : geographic_location GoldMasterOrganism : gold_id GoldMasterOrganism : gold_phylogeny GoldMasterOrganism : gram_stain GoldMasterOrganism : host_body_site GoldMasterOrganism : host_body_subsite GoldMasterOrganism : host_name GoldMasterOrganism : is_public GoldMasterOrganism : latitude GoldMasterOrganism : longitude GoldMasterOrganism : motility GoldMasterOrganism : ncbi_class GoldMasterOrganism : ncbi_family GoldMasterOrganism : ncbi_genus GoldMasterOrganism : ncbi_kingdom GoldMasterOrganism : ncbi_order GoldMasterOrganism : ncbi_phylum GoldMasterOrganism : ncbi_species GoldMasterOrganism : ncbi_superkingdom GoldMasterOrganism : ncbi_taxonomy_id GoldMasterOrganism : nitrate_concentration GoldMasterOrganism : organism_id GoldMasterOrganism : oxygen_concentration GoldMasterOrganism : oxygen_requirement GoldMasterOrganism : ph1 GoldMasterOrganism : ph2 GoldMasterOrganism : pressure GoldMasterOrganism : proport_isolation GoldMasterOrganism : proport_ocean GoldMasterOrganism : proport_station GoldMasterOrganism : proport_woa_dissolved_oxygen GoldMasterOrganism : proport_woa_nitrate GoldMasterOrganism : proport_woa_phosphate GoldMasterOrganism : proport_woa_salinity GoldMasterOrganism : proport_woa_silicate GoldMasterOrganism : proport_woa_temperature GoldMasterOrganism : salinity GoldMasterOrganism : salinity_concentration GoldMasterOrganism : sample_collection_site GoldMasterOrganism : sample_collection_temperature GoldMasterOrganism : sample_isolation_country_id GoldMasterOrganism : species GoldMasterOrganism : specific_ecosystem GoldMasterOrganism : sporulation GoldMasterOrganism : strain GoldMasterOrganism : subsurface_depth1 GoldMasterOrganism : subsurface_depth2 GoldMasterOrganism : temperature_range GoldMasterOrganism : type_strain GoldMasterOrganism : uncultured_type GoldMasterOrganism : viral_group GoldMasterOrganism : viral_subgroup

Slots

Name	Cardinality and Range	Inheritance
organism_id	0..1 Float	direct
gold_id	0..1 String	direct
active	0..1 String	direct
is_public	0..1 String	direct
ncbi_taxonomy_id	0..1 Float	direct
domain	0..1 String	direct
ncbi_superkingdom	0..1 String	direct
ncbi_kingdom	0..1 String	direct
ncbi_phylum	0..1 String	direct
ncbi_class	0..1 String	direct
ncbi_order	0..1 String	direct
ncbi_family	0..1 String	direct
ncbi_genus	0..1 String	direct
ncbi_species	0..1 String	direct
cultured	0..1 String	direct
strain	0..1 String	direct
genus	0..1 String	direct
species	0..1 String	direct
gold_phylogeny	0..1 String	direct
uncultured_type	0..1 String	direct
culture_type	0..1 String	direct
latitude	0..1 Float	direct
longitude	0..1 Float	direct
altitude	0..1 Float	direct
altitude2	0..1 Float	direct
depth	0..1 Float	direct
depth2	0..1 Float	direct
elevation	0..1 Float	direct
elevation2	0..1 Float	direct
subsurface_depth1	0..1 Float	direct
subsurface_depth2	0..1 Float	direct
clade	0..1 String	direct
sample_collection_site	0..1 String	direct
oxygen_concentration	0..1 String	direct
oxygen_requirement	0..1 String	direct
cell_shape	0..1 String	direct
motility	0..1 String	direct
sporulation	0..1 String	direct
temperature_range	0..1 String	direct
salinity	0..1 String	direct
sample_isolation_country_id	0..1 Float	direct
geographic_location	0..1 String	direct
gram_stain	0..1 String	direct
host_name	0..1 String	direct
type_strain	0..1 String	direct
ecosystem	0..1 String	direct
ecosystem_category	0..1 String	direct
ecosystem_type	0..1 String	direct
ecosystem_subtype	0..1 String	direct
specific_ecosystem	0..1 String	direct
host_body_site	0..1 String	direct
host_body_subsite	0..1 String	direct
ecotype	0..1 String	direct
proport_ocean	0..1 String	direct
proport_isolation	0..1 String	direct
proport_station	0..1 String	direct
proport_woa_temperature	0..1 Float	direct
proport_woa_salinity	0..1 Float	direct
proport_woa_dissolved_oxygen	0..1 Float	direct
proport_woa_silicate	0..1 Float	direct
proport_woa_phosphate	0..1 Float	direct
proport_woa_nitrate	0..1 Float	direct
viral_group	0..1 String	direct
viral_subgroup	0..1 String	direct
sample_collection_temperature	0..1 Float	direct
pressure	0..1 String	direct
chlorophyll_concentration	0..1 String	direct
salinity_concentration	0..1 String	direct
nitrate_concentration	0..1 String	direct
ph1	0..1 Float	direct
ph2	0..1 Float	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_gold

Mappings

Mapping Type	Mapped Value
self	img_gold:GoldMasterOrganism
native	img_gold:GoldMasterOrganism

LinkML Source

Direct

name: gold_master_organism
from_schema: https://w3id.org/jgi/img_gold
attributes:
  organism_id:
    name: organism_id
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_analysis_project
    - gold_master_organism
    - gold_master_organism_biotic_rel
    - gold_master_organism_cell_arrangement
    - gold_master_organism_disease
    - gold_master_organism_energy_source
    - gold_master_organism_habitat
    - gold_master_organism_metabolism
    - gold_master_organism_phenotype
    - gold_master_permission
    - gold_master_project
    range: float
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    range: string
    required: false
  active:
    name: active
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  ncbi_taxonomy_id:
    name: ncbi_taxonomy_id
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_superkingdom:
    name: ncbi_superkingdom
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  ncbi_kingdom:
    name: ncbi_kingdom
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  cultured:
    name: cultured
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  gold_phylogeny:
    name: gold_phylogeny
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  uncultured_type:
    name: uncultured_type
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  culture_type:
    name: culture_type
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  altitude2:
    name: altitude2
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  depth2:
    name: depth2
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation:
    name: elevation
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation2:
    name: elevation2
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  subsurface_depth1:
    name: subsurface_depth1
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    range: float
    required: false
  subsurface_depth2:
    name: subsurface_depth2
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  clade:
    name: clade
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sample_collection_site:
    name: sample_collection_site
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  oxygen_concentration:
    name: oxygen_concentration
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  oxygen_requirement:
    name: oxygen_requirement
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    range: string
    required: false
  cell_shape:
    name: cell_shape
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  motility:
    name: motility
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sporulation:
    name: sporulation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  temperature_range:
    name: temperature_range
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    range: string
    required: false
  salinity:
    name: salinity
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sample_isolation_country_id:
    name: sample_isolation_country_id
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  geographic_location:
    name: geographic_location
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  gram_stain:
    name: gram_stain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  host_name:
    name: host_name
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  type_strain:
    name: type_strain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  host_body_site:
    name: host_body_site
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  host_body_subsite:
    name: host_body_subsite
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  ecotype:
    name: ecotype
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_ocean:
    name: proport_ocean
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_isolation:
    name: proport_isolation
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_station:
    name: proport_station
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_woa_temperature:
    name: proport_woa_temperature
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_salinity:
    name: proport_woa_salinity
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_dissolved_oxygen:
    name: proport_woa_dissolved_oxygen
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_silicate:
    name: proport_woa_silicate
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_phosphate:
    name: proport_woa_phosphate
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_nitrate:
    name: proport_woa_nitrate
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  viral_group:
    name: viral_group
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  viral_subgroup:
    name: viral_subgroup
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sample_collection_temperature:
    name: sample_collection_temperature
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    domain_of:
    - gold_master_organism
    range: float
    required: false
  pressure:
    name: pressure
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  chlorophyll_concentration:
    name: chlorophyll_concentration
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  salinity_concentration:
    name: salinity_concentration
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  nitrate_concentration:
    name: nitrate_concentration
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ph1:
    name: ph1
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  ph2:
    name: ph2
    from_schema: https://w3id.org/jgi/img_gold
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false

Induced

name: gold_master_organism
from_schema: https://w3id.org/jgi/img_gold
attributes:
  organism_id:
    name: organism_id
    from_schema: https://w3id.org/jgi/img_gold
    alias: organism_id
    owner: gold_master_organism
    domain_of:
    - gold_master_analysis_project
    - gold_master_organism
    - gold_master_organism_biotic_rel
    - gold_master_organism_cell_arrangement
    - gold_master_organism_disease
    - gold_master_organism_energy_source
    - gold_master_organism_habitat
    - gold_master_organism_metabolism
    - gold_master_organism_phenotype
    - gold_master_permission
    - gold_master_project
    range: float
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_gold
    alias: gold_id
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    range: string
    required: false
  active:
    name: active
    from_schema: https://w3id.org/jgi/img_gold
    alias: active
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_gold
    alias: is_public
    owner: gold_master_organism
    domain_of:
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_project
    - gold_master_study
    range: string
    required: false
  ncbi_taxonomy_id:
    name: ncbi_taxonomy_id
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_taxonomy_id
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/img_gold
    alias: domain
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_superkingdom:
    name: ncbi_superkingdom
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_superkingdom
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  ncbi_kingdom:
    name: ncbi_kingdom
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ncbi_kingdom
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_phylum
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_class
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_order
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_family
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_genus
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/img_gold
    alias: ncbi_species
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  cultured:
    name: cultured
    from_schema: https://w3id.org/jgi/img_gold
    alias: cultured
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/img_gold
    alias: strain
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/img_gold
    alias: genus
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/img_gold
    alias: species
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  gold_phylogeny:
    name: gold_phylogeny
    from_schema: https://w3id.org/jgi/img_gold
    alias: gold_phylogeny
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    range: string
    required: false
  uncultured_type:
    name: uncultured_type
    from_schema: https://w3id.org/jgi/img_gold
    alias: uncultured_type
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  culture_type:
    name: culture_type
    from_schema: https://w3id.org/jgi/img_gold
    alias: culture_type
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/img_gold
    alias: latitude
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/img_gold
    alias: longitude
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/img_gold
    alias: altitude
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  altitude2:
    name: altitude2
    from_schema: https://w3id.org/jgi/img_gold
    alias: altitude2
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/img_gold
    alias: depth
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  depth2:
    name: depth2
    from_schema: https://w3id.org/jgi/img_gold
    alias: depth2
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation:
    name: elevation
    from_schema: https://w3id.org/jgi/img_gold
    alias: elevation
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  elevation2:
    name: elevation2
    from_schema: https://w3id.org/jgi/img_gold
    alias: elevation2
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  subsurface_depth1:
    name: subsurface_depth1
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: subsurface_depth1
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    range: float
    required: false
  subsurface_depth2:
    name: subsurface_depth2
    from_schema: https://w3id.org/jgi/img_gold
    alias: subsurface_depth2
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  clade:
    name: clade
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: clade
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sample_collection_site:
    name: sample_collection_site
    from_schema: https://w3id.org/jgi/img_gold
    alias: sample_collection_site
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  oxygen_concentration:
    name: oxygen_concentration
    from_schema: https://w3id.org/jgi/img_gold
    alias: oxygen_concentration
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  oxygen_requirement:
    name: oxygen_requirement
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: oxygen_requirement
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    range: string
    required: false
  cell_shape:
    name: cell_shape
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: cell_shape
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  motility:
    name: motility
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: motility
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sporulation:
    name: sporulation
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sporulation
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  temperature_range:
    name: temperature_range
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: temperature_range
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    range: string
    required: false
  salinity:
    name: salinity
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: salinity
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sample_isolation_country_id:
    name: sample_isolation_country_id
    from_schema: https://w3id.org/jgi/img_gold
    alias: sample_isolation_country_id
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  geographic_location:
    name: geographic_location
    from_schema: https://w3id.org/jgi/img_gold
    alias: geographic_location
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  gram_stain:
    name: gram_stain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: gram_stain
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  host_name:
    name: host_name
    from_schema: https://w3id.org/jgi/img_gold
    alias: host_name
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  type_strain:
    name: type_strain
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: type_strain
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem_category
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem_type
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/img_gold
    alias: ecosystem_subtype
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/img_gold
    alias: specific_ecosystem
    owner: gold_master_organism
    domain_of:
    - gold_analysis_project
    - gold_master_analysis_project
    - gold_master_biosample
    - gold_master_organism
    - gold_master_study
    - gold_sequencing_project
    - gold_study
    range: string
    required: false
  host_body_site:
    name: host_body_site
    from_schema: https://w3id.org/jgi/img_gold
    alias: host_body_site
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  host_body_subsite:
    name: host_body_subsite
    from_schema: https://w3id.org/jgi/img_gold
    alias: host_body_subsite
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: string
    required: false
  ecotype:
    name: ecotype
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: ecotype
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_ocean:
    name: proport_ocean
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_ocean
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_isolation:
    name: proport_isolation
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_isolation
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_station:
    name: proport_station
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_station
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  proport_woa_temperature:
    name: proport_woa_temperature
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_woa_temperature
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_salinity:
    name: proport_woa_salinity
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_woa_salinity
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_dissolved_oxygen:
    name: proport_woa_dissolved_oxygen
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_woa_dissolved_oxygen
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_silicate:
    name: proport_woa_silicate
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_woa_silicate
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_phosphate:
    name: proport_woa_phosphate
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_woa_phosphate
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  proport_woa_nitrate:
    name: proport_woa_nitrate
    from_schema: https://w3id.org/jgi/img_gold
    alias: proport_woa_nitrate
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: float
    required: false
  viral_group:
    name: viral_group
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: viral_group
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  viral_subgroup:
    name: viral_subgroup
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: viral_subgroup
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  sample_collection_temperature:
    name: sample_collection_temperature
    from_schema: https://w3id.org/jgi/img_gold
    rank: 1000
    alias: sample_collection_temperature
    owner: gold_master_organism
    domain_of:
    - gold_master_organism
    range: float
    required: false
  pressure:
    name: pressure
    from_schema: https://w3id.org/jgi/img_gold
    alias: pressure
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  chlorophyll_concentration:
    name: chlorophyll_concentration
    from_schema: https://w3id.org/jgi/img_gold
    alias: chlorophyll_concentration
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  salinity_concentration:
    name: salinity_concentration
    from_schema: https://w3id.org/jgi/img_gold
    alias: salinity_concentration
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  nitrate_concentration:
    name: nitrate_concentration
    from_schema: https://w3id.org/jgi/img_gold
    alias: nitrate_concentration
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    - gold_sequencing_project
    range: string
    required: false
  ph1:
    name: ph1
    from_schema: https://w3id.org/jgi/img_gold
    alias: ph1
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false
  ph2:
    name: ph2
    from_schema: https://w3id.org/jgi/img_gold
    alias: ph2
    owner: gold_master_organism
    domain_of:
    - gold_master_biosample
    - gold_master_organism
    range: float
    required: false