Class: Scaffold

URI: img_i_taxon:Scaffold

classDiagram class Scaffold click Scaffold href "../Scaffold/" Scaffold : add_date Scaffold : chromosome Scaffold : contig_id_map Scaffold : contig_id_orig Scaffold : db_source Scaffold : dna_md5checksum Scaffold : env_sample Scaffold : ext_accession Scaffold : last_update Scaffold : mol_topology Scaffold : mol_type Scaffold : read_depth Scaffold : scaffold_name Scaffold : scaffold_oid Scaffold : seq_file Scaffold : taxon

Slots

Name	Cardinality and Range	Inheritance
scaffold_oid	0..1 Integer	direct
scaffold_name	0..1 String	direct
chromosome	0..1 String	direct
mol_topology	0..1 String	direct
mol_type	0..1 String	direct
taxon	0..1 Integer	direct
env_sample	0..1 Integer	direct
ext_accession	0..1 String	direct
db_source	0..1 String	direct
seq_file	0..1 String	direct
last_update	0..1 Datetime	direct
add_date	0..1 Datetime	direct
read_depth	0..1 Float	direct
dna_md5checksum	0..1 String	direct
contig_id_map	0..1 String	direct
contig_id_orig	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_i_taxon

Mappings

Mapping Type	Mapped Value
self	img_i_taxon:Scaffold
native	img_i_taxon:Scaffold

LinkML Source

Direct

name: scaffold
from_schema: https://w3id.org/jgi/img_i_taxon
attributes:
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: integer
    required: false
  scaffold_name:
    name: scaffold_name
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  chromosome:
    name: chromosome
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  mol_topology:
    name: mol_topology
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  mol_type:
    name: mol_type
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: integer
    required: false
  env_sample:
    name: env_sample
    from_schema: https://w3id.org/jgi/img_i_taxon
    domain_of:
    - i_taxon_original_070323
    - scaffold
    range: integer
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  db_source:
    name: db_source
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  seq_file:
    name: seq_file
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  last_update:
    name: last_update
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: datetime
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_i_taxon
    domain_of:
    - i_taxon_original_070323
    - replaced_metagenomes
    - scaffold
    - taxon
    range: datetime
    required: false
  read_depth:
    name: read_depth
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: float
    required: false
  dna_md5checksum:
    name: dna_md5checksum
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  contig_id_map:
    name: contig_id_map
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false
  contig_id_orig:
    name: contig_id_orig
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    domain_of:
    - scaffold
    range: string
    required: false

Induced

name: scaffold
from_schema: https://w3id.org/jgi/img_i_taxon
attributes:
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: scaffold_oid
    owner: scaffold
    domain_of:
    - scaffold
    range: integer
    required: false
  scaffold_name:
    name: scaffold_name
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: scaffold_name
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  chromosome:
    name: chromosome
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: chromosome
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  mol_topology:
    name: mol_topology
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: mol_topology
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  mol_type:
    name: mol_type
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: mol_type
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: taxon
    owner: scaffold
    domain_of:
    - scaffold
    range: integer
    required: false
  env_sample:
    name: env_sample
    from_schema: https://w3id.org/jgi/img_i_taxon
    alias: env_sample
    owner: scaffold
    domain_of:
    - i_taxon_original_070323
    - scaffold
    range: integer
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: ext_accession
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  db_source:
    name: db_source
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: db_source
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  seq_file:
    name: seq_file
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: seq_file
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  last_update:
    name: last_update
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: last_update
    owner: scaffold
    domain_of:
    - scaffold
    range: datetime
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_i_taxon
    alias: add_date
    owner: scaffold
    domain_of:
    - i_taxon_original_070323
    - replaced_metagenomes
    - scaffold
    - taxon
    range: datetime
    required: false
  read_depth:
    name: read_depth
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: read_depth
    owner: scaffold
    domain_of:
    - scaffold
    range: float
    required: false
  dna_md5checksum:
    name: dna_md5checksum
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: dna_md5checksum
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  contig_id_map:
    name: contig_id_map
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: contig_id_map
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false
  contig_id_orig:
    name: contig_id_orig
    from_schema: https://w3id.org/jgi/img_i_taxon
    rank: 1000
    alias: contig_id_orig
    owner: scaffold
    domain_of:
    - scaffold
    range: string
    required: false