Class: MethModification

URI: img_methylome:MethModification

classDiagram class MethModification click MethModification href "../MethModification/" MethModification : context MethModification : coverage MethModification : end_coord MethModification : experiment MethModification : img_scaffold_oid MethModification : img_taxon_oid MethModification : ipd_ratio MethModification : methylation_coord MethModification : modification_oid MethModification : motif_string MethModification : motif_summary MethModification : phase MethModification : refid MethModification : sample MethModification : score MethModification : start_coord MethModification : strand MethModification : tool_name MethModification : type

Slots

Name	Cardinality and Range	Inheritance
modification_oid	0..1 Integer	direct
motif_summary	0..1 Integer	direct
refid	0..1 String	direct
img_scaffold_oid	0..1 Integer	direct
img_taxon_oid	0..1 Integer	direct
tool_name	0..1 String	direct
type	0..1 String	direct
start_coord	0..1 Float	direct
end_coord	0..1 Float	direct
score	0..1 Float	direct
strand	0..1 String	direct
phase	0..1 String	direct
ipd_ratio	0..1 Float	direct
context	0..1 String	direct
coverage	0..1 Float	direct
motif_string	0..1 String	direct
sample	0..1 Integer	direct
experiment	0..1 Integer	direct
methylation_coord	0..1 Float	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_methylome

Mappings

Mapping Type	Mapped Value
self	img_methylome:MethModification
native	img_methylome:MethModification

LinkML Source

Direct

name: meth_modification
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  modification_oid:
    name: modification_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    range: integer
    required: false
  motif_summary:
    name: motif_summary
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    range: integer
    required: false
  refid:
    name: refid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  img_scaffold_oid:
    name: img_scaffold_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: integer
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  tool_name:
    name: tool_name
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  score:
    name: score
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  phase:
    name: phase
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  ipd_ratio:
    name: ipd_ratio
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  context:
    name: context
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  coverage:
    name: coverage
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  motif_string:
    name: motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: string
    required: false
  sample:
    name: sample
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: integer
    required: false
  experiment:
    name: experiment
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  methylation_coord:
    name: methylation_coord
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_modification
    range: float
    required: false

Induced

name: meth_modification
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  modification_oid:
    name: modification_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: modification_oid
    owner: meth_modification
    domain_of:
    - meth_modification
    range: integer
    required: false
  motif_summary:
    name: motif_summary
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: motif_summary
    owner: meth_modification
    domain_of:
    - meth_modification
    range: integer
    required: false
  refid:
    name: refid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: refid
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  img_scaffold_oid:
    name: img_scaffold_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: img_scaffold_oid
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: integer
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: img_taxon_oid
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  tool_name:
    name: tool_name
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: tool_name
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: type
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: start_coord
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: end_coord
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  score:
    name: score
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: score
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: strand
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  phase:
    name: phase
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: phase
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  ipd_ratio:
    name: ipd_ratio
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: ipd_ratio
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  context:
    name: context
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: context
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  coverage:
    name: coverage
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: coverage
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  motif_string:
    name: motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: motif_string
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: string
    required: false
  sample:
    name: sample
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: sample
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: integer
    required: false
  experiment:
    name: experiment
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: experiment
    owner: meth_modification
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  methylation_coord:
    name: methylation_coord
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: methylation_coord
    owner: meth_modification
    domain_of:
    - meth_modification
    range: float
    required: false