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Class: MethMotif

URI: img_methylome:MethMotif

classDiagram class MethMotif click MethMotif href "../MethMotif/" MethMotif : context MethMotif : coverage MethMotif : end_coord MethMotif : experiment MethMotif : img_scaffold_oid MethMotif : img_taxon_oid MethMotif : ipd_ratio MethMotif : motif_oid MethMotif : motif_string MethMotif : phase MethMotif : refid MethMotif : sample MethMotif : score MethMotif : start_coord MethMotif : strand MethMotif : tool_name MethMotif : type

Slots

Name Cardinality and Range Description Inheritance
motif_oid 0..1
Integer		 direct
refid 0..1
String		 direct
img_scaffold_oid 0..1
Integer		 direct
img_taxon_oid 0..1
Integer		 direct
tool_name 0..1
String		 direct
type 0..1
String		 direct
start_coord 0..1
Float		 direct
end_coord 0..1
Float		 direct
score 0..1
Float		 direct
strand 0..1
String		 direct
phase 0..1
String		 direct
ipd_ratio 0..1
Float		 direct
context 0..1
String		 direct
coverage 0..1
Float		 direct
motif_string 0..1
String		 direct
sample 0..1
Integer		 direct
experiment 0..1
Integer		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_methylome

Mappings

Mapping Type Mapped Value
self img_methylome:MethMotif
native img_methylome:MethMotif

LinkML Source

Direct

name: meth_motif
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  motif_oid:
    name: motif_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif
    range: integer
    required: false
  refid:
    name: refid
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  img_scaffold_oid:
    name: img_scaffold_oid
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: integer
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  tool_name:
    name: tool_name
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  score:
    name: score
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  phase:
    name: phase
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  ipd_ratio:
    name: ipd_ratio
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  context:
    name: context
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  coverage:
    name: coverage
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  motif_string:
    name: motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: string
    required: false
  sample:
    name: sample
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: integer
    required: false
  experiment:
    name: experiment
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false

Induced

name: meth_motif
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  motif_oid:
    name: motif_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: motif_oid
    owner: meth_motif
    domain_of:
    - meth_motif
    range: integer
    required: false
  refid:
    name: refid
    from_schema: https://w3id.org/jgi/img_methylome
    alias: refid
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  img_scaffold_oid:
    name: img_scaffold_oid
    from_schema: https://w3id.org/jgi/img_methylome
    alias: img_scaffold_oid
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: integer
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    alias: img_taxon_oid
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  tool_name:
    name: tool_name
    from_schema: https://w3id.org/jgi/img_methylome
    alias: tool_name
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_methylome
    alias: type
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_methylome
    alias: start_coord
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_methylome
    alias: end_coord
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  score:
    name: score
    from_schema: https://w3id.org/jgi/img_methylome
    alias: score
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_methylome
    alias: strand
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  phase:
    name: phase
    from_schema: https://w3id.org/jgi/img_methylome
    alias: phase
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  ipd_ratio:
    name: ipd_ratio
    from_schema: https://w3id.org/jgi/img_methylome
    alias: ipd_ratio
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  context:
    name: context
    from_schema: https://w3id.org/jgi/img_methylome
    alias: context
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: string
    required: false
  coverage:
    name: coverage
    from_schema: https://w3id.org/jgi/img_methylome
    alias: coverage
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    range: float
    required: false
  motif_string:
    name: motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    alias: motif_string
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: string
    required: false
  sample:
    name: sample
    from_schema: https://w3id.org/jgi/img_methylome
    alias: sample
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: integer
    required: false
  experiment:
    name: experiment
    from_schema: https://w3id.org/jgi/img_methylome
    alias: experiment
    owner: meth_motif
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false