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Class: MethMotifSummary

URI: img_methylome:MethMotifSummary

classDiagram class MethMotifSummary click MethMotifSummary href "../MethMotifSummary/" MethMotifSummary : center_pos MethMotifSummary : experiment MethMotifSummary --> "0..1" MethExperiment : experiment click MethExperiment href "../MethExperiment/" MethMotifSummary : fraction MethMotifSummary : group_tag MethMotifSummary : img_taxon_oid MethMotifSummary : mean_coverage MethMotifSummary : mean_ipd_ratio MethMotifSummary : mean_score MethMotifSummary : modification_type MethMotifSummary : motif_string MethMotifSummary : motif_summ_oid MethMotifSummary : n_detected MethMotifSummary : n_genome MethMotifSummary : objective_score MethMotifSummary : partner_motif_string MethMotifSummary : sample MethMotifSummary --> "0..1" MethSample : sample click MethSample href "../MethSample/"

Slots

Name Cardinality and Range Description Inheritance
motif_summ_oid 0..1
Integer		 direct
experiment 0..1
MethExperiment		 Foreign key to meth_experiment direct
sample 0..1
MethSample		 Foreign key to meth_sample direct
img_taxon_oid 0..1
Integer		 direct
motif_string 0..1
String		 direct
center_pos 0..1
Float		 direct
fraction 0..1
Float		 direct
n_detected 0..1
Float		 direct
n_genome 0..1
Float		 direct
group_tag 0..1
String		 direct
partner_motif_string 0..1
String		 direct
mean_score 0..1
Float		 direct
mean_ipd_ratio 0..1
Float		 direct
mean_coverage 0..1
Float		 direct
objective_score 0..1
Float		 direct
modification_type 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_methylome

Mappings

Mapping Type Mapped Value
self img_methylome:MethMotifSummary
native img_methylome:MethMotifSummary

LinkML Source

Direct

name: meth_motif_summary
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  motif_summ_oid:
    name: motif_summ_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: integer
    required: false
  experiment:
    name: experiment
    description: Foreign key to meth_experiment
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: meth_experiment
    required: false
  sample:
    name: sample
    description: Foreign key to meth_sample
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: meth_sample
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  motif_string:
    name: motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: string
    required: false
  center_pos:
    name: center_pos
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  fraction:
    name: fraction
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  n_detected:
    name: n_detected
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  n_genome:
    name: n_genome
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  group_tag:
    name: group_tag
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: string
    required: false
  partner_motif_string:
    name: partner_motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: string
    required: false
  mean_score:
    name: mean_score
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  mean_ipd_ratio:
    name: mean_ipd_ratio
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  mean_coverage:
    name: mean_coverage
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  objective_score:
    name: objective_score
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  modification_type:
    name: modification_type
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_motif_summary
    range: string
    required: false

Induced

name: meth_motif_summary
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  motif_summ_oid:
    name: motif_summ_oid
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: motif_summ_oid
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: integer
    required: false
  experiment:
    name: experiment
    description: Foreign key to meth_experiment
    from_schema: https://w3id.org/jgi/img_methylome
    alias: experiment
    owner: meth_motif_summary
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: meth_experiment
    required: false
  sample:
    name: sample
    description: Foreign key to meth_sample
    from_schema: https://w3id.org/jgi/img_methylome
    alias: sample
    owner: meth_motif_summary
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: meth_sample
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    alias: img_taxon_oid
    owner: meth_motif_summary
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  motif_string:
    name: motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    alias: motif_string
    owner: meth_motif_summary
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    range: string
    required: false
  center_pos:
    name: center_pos
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: center_pos
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  fraction:
    name: fraction
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: fraction
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  n_detected:
    name: n_detected
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: n_detected
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  n_genome:
    name: n_genome
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: n_genome
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  group_tag:
    name: group_tag
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: group_tag
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: string
    required: false
  partner_motif_string:
    name: partner_motif_string
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: partner_motif_string
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: string
    required: false
  mean_score:
    name: mean_score
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: mean_score
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  mean_ipd_ratio:
    name: mean_ipd_ratio
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: mean_ipd_ratio
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  mean_coverage:
    name: mean_coverage
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: mean_coverage
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  objective_score:
    name: objective_score
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: objective_score
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: float
    required: false
  modification_type:
    name: modification_type
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: modification_type
    owner: meth_motif_summary
    domain_of:
    - meth_motif_summary
    range: string
    required: false