Class: MethSample

URI: img_methylome:MethSample

classDiagram class MethSample click MethSample href "../MethSample/" MethSample : description MethSample : experiment MethSample --> "0..1" MethExperiment : experiment click MethExperiment href "../MethExperiment/" MethSample : img_taxon_oid MethSample : organism_name MethSample : sample_oid

Slots

Name	Cardinality and Range	Description	Inheritance
sample_oid	0..1 Integer		direct
description	0..1 String		direct
organism_name	0..1 String		direct
img_taxon_oid	0..1 Integer		direct
experiment	0..1 MethExperiment	Foreign key to meth_experiment	direct

Usages

used by	used in	type	used
MethFunctionCoverage	sample_oid	range	MethSample
MethMotifSummary	sample	range	MethSample
MethStats	sample_oid	range	MethSample

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_methylome

Mappings

Mapping Type	Mapped Value
self	img_methylome:MethSample
native	img_methylome:MethSample

LinkML Source

Direct

name: meth_sample
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_function_coverage
    - meth_sample
    - meth_stats
    range: integer
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_exp
    - meth_experiment
    - meth_sample
    range: string
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    domain_of:
    - meth_sample
    range: string
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  experiment:
    name: experiment
    description: Foreign key to meth_experiment
    from_schema: https://w3id.org/jgi/img_methylome
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: meth_experiment
    required: false

Induced

name: meth_sample
from_schema: https://w3id.org/jgi/img_methylome
attributes:
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_methylome
    alias: sample_oid
    owner: meth_sample
    domain_of:
    - meth_function_coverage
    - meth_sample
    - meth_stats
    range: integer
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_methylome
    alias: description
    owner: meth_sample
    domain_of:
    - meth_exp
    - meth_experiment
    - meth_sample
    range: string
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/img_methylome
    rank: 1000
    alias: organism_name
    owner: meth_sample
    domain_of:
    - meth_sample
    range: string
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_methylome
    alias: img_taxon_oid
    owner: meth_sample
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: integer
    required: false
  experiment:
    name: experiment
    description: Foreign key to meth_experiment
    from_schema: https://w3id.org/jgi/img_methylome
    alias: experiment
    owner: meth_sample
    domain_of:
    - meth_modification
    - meth_motif
    - meth_motif_summary
    - meth_sample
    range: meth_experiment
    required: false