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Class: BcgBinGenePfams

URI: img_mysql_abc:BcgBinGenePfams

classDiagram class BcgBinGenePfams click BcgBinGenePfams href "../BcgBinGenePfams/" BcgBinGenePfams : gene_oid BcgBinGenePfams : pfam_id BcgBinGenePfams : query_start BcgBinGenePfams : taxon_oid

Slots

Name Cardinality and Range Description Inheritance
gene_oid 0..1
String		 direct
pfam_id 0..1
String		 direct
query_start 0..1
Integer		 direct
taxon_oid 0..1
Integer		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_mysql_abc

Mappings

Mapping Type Mapped Value
self img_mysql_abc:BcgBinGenePfams
native img_mysql_abc:BcgBinGenePfams

LinkML Source

Direct

name: bcg_bin_gene_pfams
from_schema: https://w3id.org/jgi/img_mysql_abc
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_bin_region_genes
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    - bcg_region_genes
    - bcg_region_genes_new
    - tmp_genes
    range: string
    required: false
  pfam_id:
    name: pfam_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    range: string
    required: false
  query_start:
    name: query_start
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    range: integer
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - asv5_taxons
    - bcg_bin_gene_pfams
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - taxon_bcg_type
    - tmp_genes
    range: integer
    required: false

Induced

name: bcg_bin_gene_pfams
from_schema: https://w3id.org/jgi/img_mysql_abc
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    alias: gene_oid
    owner: bcg_bin_gene_pfams
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_bin_region_genes
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    - bcg_region_genes
    - bcg_region_genes_new
    - tmp_genes
    range: string
    required: false
  pfam_id:
    name: pfam_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    alias: pfam_id
    owner: bcg_bin_gene_pfams
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    range: string
    required: false
  query_start:
    name: query_start
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    alias: query_start
    owner: bcg_bin_gene_pfams
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    range: integer
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: taxon_oid
    owner: bcg_bin_gene_pfams
    domain_of:
    - asv5_taxons
    - bcg_bin_gene_pfams
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - taxon_bcg_type
    - tmp_genes
    range: integer
    required: false