Class: BcgRegion

URI: img_mysql_abc:BcgRegion

classDiagram class BcgRegion click BcgRegion href "../BcgRegion/" BcgRegion : add_date BcgRegion : bcg_method BcgRegion : bcg_rules BcgRegion : bcg_type BcgRegion : end_coord BcgRegion : region_id BcgRegion : scaffold_oid BcgRegion : seq_id BcgRegion : start_coord BcgRegion : taxon_oid

Slots

Name	Cardinality and Range	Inheritance
region_id	0..1 String	direct
taxon_oid	0..1 Integer	direct
scaffold_oid	0..1 Integer	direct
start_coord	0..1 Integer	direct
end_coord	0..1 Integer	direct
add_date	0..1 Date	direct
bcg_type	0..1 String	direct
seq_id	0..1 String	direct
bcg_method	0..1 String	direct
bcg_rules	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_mysql_abc

Mappings

Mapping Type	Mapped Value
self	img_mysql_abc:BcgRegion
native	img_mysql_abc:BcgRegion

LinkML Source

Direct

name: bcg_region
from_schema: https://w3id.org/jgi/img_mysql_abc
attributes:
  region_id:
    name: region_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - bcg_region_stats
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - asv5_taxons
    - bcg_bin_gene_pfams
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - taxon_bcg_type
    - tmp_genes
    range: integer
    required: false
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    domain_of:
    - bcg_region
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - tmp_genes
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    - my_bcg
    range: date
    required: false
  bcg_type:
    name: bcg_type
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    - bcg_type
    - taxon_bcg_type
    range: string
    required: false
  seq_id:
    name: seq_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    range: string
    required: false
  bcg_method:
    name: bcg_method
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    range: string
    required: false
  bcg_rules:
    name: bcg_rules
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    range: string
    required: false

Induced

name: bcg_region
from_schema: https://w3id.org/jgi/img_mysql_abc
attributes:
  region_id:
    name: region_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: region_id
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - bcg_region_stats
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: taxon_oid
    owner: bcg_region
    domain_of:
    - asv5_taxons
    - bcg_bin_gene_pfams
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - taxon_bcg_type
    - tmp_genes
    range: integer
    required: false
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    alias: scaffold_oid
    owner: bcg_region
    domain_of:
    - bcg_region
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - tmp_genes
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: start_coord
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: end_coord
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: add_date
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    - my_bcg
    range: date
    required: false
  bcg_type:
    name: bcg_type
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: bcg_type
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    - bcg_type
    - taxon_bcg_type
    range: string
    required: false
  seq_id:
    name: seq_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: seq_id
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    range: string
    required: false
  bcg_method:
    name: bcg_method
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: bcg_method
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    range: string
    required: false
  bcg_rules:
    name: bcg_rules
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: bcg_rules
    owner: bcg_region
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_new
    range: string
    required: false