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Class: BcgRegionGenes

URI: img_mysql_abc:BcgRegionGenes

classDiagram class BcgRegionGenes click BcgRegionGenes href "../BcgRegionGenes/" BcgRegionGenes : bcg_gene_type BcgRegionGenes : end_coord BcgRegionGenes : gene_functions BcgRegionGenes : gene_oid BcgRegionGenes : is_protocore_gene BcgRegionGenes : locus_tag BcgRegionGenes : match_type BcgRegionGenes : region_id BcgRegionGenes : scaffold_oid BcgRegionGenes : start_coord BcgRegionGenes : strand BcgRegionGenes : taxon_oid

Slots

Name Cardinality and Range Description Inheritance
region_id 0..1
String		 direct
bcg_gene_type 0..1
String		 direct
gene_oid 0..1
Integer		 direct
taxon_oid 0..1
Integer		 direct
scaffold_oid 0..1
Integer		 direct
gene_functions 0..1
String		 direct
is_protocore_gene 0..1
String		 direct
locus_tag 0..1
String		 direct
start_coord 0..1
Integer		 direct
end_coord 0..1
Integer		 direct
strand 0..1
String		 direct
match_type 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_mysql_abc

Mappings

Mapping Type Mapped Value
self img_mysql_abc:BcgRegionGenes
native img_mysql_abc:BcgRegionGenes

LinkML Source

Direct

name: bcg_region_genes
from_schema: https://w3id.org/jgi/img_mysql_abc
attributes:
  region_id:
    name: region_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - bcg_region_stats
    range: string
    required: false
  bcg_gene_type:
    name: bcg_gene_type
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region_genes
    - bcg_region_genes
    - bcg_region_genes_new
    range: string
    required: false
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_bin_region_genes
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    - bcg_region_genes
    - bcg_region_genes_new
    - tmp_genes
    range: integer
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - asv5_taxons
    - bcg_bin_gene_pfams
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - taxon_bcg_type
    - tmp_genes
    range: integer
    required: false
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_region
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - tmp_genes
    range: integer
    required: false
  gene_functions:
    name: gene_functions
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region_genes
    - bcg_region_genes
    - bcg_region_genes_new
    range: string
    required: false
  is_protocore_gene:
    name: is_protocore_gene
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region_genes
    - bcg_region_genes
    - bcg_region_genes_new
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    domain_of:
    - bcg_region_genes
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    domain_of:
    - bcg_region_genes
    range: string
    required: false
  match_type:
    name: match_type
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    domain_of:
    - bcg_region_genes
    range: string
    required: false

Induced

name: bcg_region_genes
from_schema: https://w3id.org/jgi/img_mysql_abc
attributes:
  region_id:
    name: region_id
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: region_id
    owner: bcg_region_genes
    domain_of:
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - bcg_region_stats
    range: string
    required: false
  bcg_gene_type:
    name: bcg_gene_type
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: bcg_gene_type
    owner: bcg_region_genes
    domain_of:
    - bcg_bin_region_genes
    - bcg_region_genes
    - bcg_region_genes_new
    range: string
    required: false
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: gene_oid
    owner: bcg_region_genes
    domain_of:
    - bcg_bin_gene_pfams
    - bcg_bin_region_genes
    - bcg_gene_pfams
    - bcg_gene_pfams_obs
    - bcg_region_genes
    - bcg_region_genes_new
    - tmp_genes
    range: integer
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: taxon_oid
    owner: bcg_region_genes
    domain_of:
    - asv5_taxons
    - bcg_bin_gene_pfams
    - bcg_bin_region
    - bcg_bin_region_genes
    - bcg_region
    - bcg_region_ext_links
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - bcg_region_sms
    - taxon_bcg_type
    - tmp_genes
    range: integer
    required: false
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: scaffold_oid
    owner: bcg_region_genes
    domain_of:
    - bcg_region
    - bcg_region_genes
    - bcg_region_genes_new
    - bcg_region_new
    - tmp_genes
    range: integer
    required: false
  gene_functions:
    name: gene_functions
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: gene_functions
    owner: bcg_region_genes
    domain_of:
    - bcg_bin_region_genes
    - bcg_region_genes
    - bcg_region_genes_new
    range: string
    required: false
  is_protocore_gene:
    name: is_protocore_gene
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: is_protocore_gene
    owner: bcg_region_genes
    domain_of:
    - bcg_bin_region_genes
    - bcg_region_genes
    - bcg_region_genes_new
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    alias: locus_tag
    owner: bcg_region_genes
    domain_of:
    - bcg_region_genes
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: start_coord
    owner: bcg_region_genes
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_mysql_abc
    alias: end_coord
    owner: bcg_region_genes
    domain_of:
    - bcg_bin_region
    - bcg_region
    - bcg_region_genes
    - bcg_region_new
    range: integer
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    alias: strand
    owner: bcg_region_genes
    domain_of:
    - bcg_region_genes
    range: string
    required: false
  match_type:
    name: match_type
    from_schema: https://w3id.org/jgi/img_mysql_abc
    rank: 1000
    alias: match_type
    owner: bcg_region_genes
    domain_of:
    - bcg_region_genes
    range: string
    required: false