Class: BinScaffolds
URI: img_mysql_mbin:BinScaffolds
classDiagram
class BinScaffolds
click BinScaffolds href "../BinScaffolds/"
BinScaffolds : bin_oid
BinScaffolds : gc
BinScaffolds : gene_count
BinScaffolds : scaf_class
BinScaffolds : scaf_domain
BinScaffolds : scaf_family
BinScaffolds : scaf_genus
BinScaffolds : scaf_num_16s
BinScaffolds : scaf_num_23s
BinScaffolds : scaf_num_5s
BinScaffolds : scaf_num_trna
BinScaffolds : scaf_order
BinScaffolds : scaf_phylum
BinScaffolds : scaf_species
BinScaffolds : scaffold_length
BinScaffolds : scaffold_oid
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| bin_oid | 0..1 String |
direct | |
| scaffold_oid | 0..1 String |
direct | |
| scaffold_length | 0..1 Integer |
direct | |
| gc | 0..1 Float |
direct | |
| gene_count | 0..1 Integer |
direct | |
| scaf_domain | 0..1 String |
direct | |
| scaf_phylum | 0..1 String |
direct | |
| scaf_class | 0..1 String |
direct | |
| scaf_order | 0..1 String |
direct | |
| scaf_family | 0..1 String |
direct | |
| scaf_genus | 0..1 String |
direct | |
| scaf_species | 0..1 String |
direct | |
| scaf_num_16s | 0..1 Integer |
direct | |
| scaf_num_5s | 0..1 Integer |
direct | |
| scaf_num_23s | 0..1 Integer |
direct | |
| scaf_num_trna | 0..1 Integer |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_mysql_mbin
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_mysql_mbin:BinScaffolds |
| native | img_mysql_mbin:BinScaffolds |
LinkML Source
Direct
name: bin_scaffolds
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
bin_oid:
name: bin_oid
from_schema: https://w3id.org/jgi/img_mysql_mbin
domain_of:
- bin
- bin_coverage
- bin_scaffolds
- semi_bin
- semi_bin_coverage
- semi_bin_scaffolds
- semi_lq
range: string
required: false
scaffold_oid:
name: scaffold_oid
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- ebin_scaffolds
- semi_bin_scaffolds
- semi_ebin_scaffolds
range: string
required: false
scaffold_length:
name: scaffold_length
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- ebin_scaffolds
- semi_bin_scaffolds
- semi_ebin_scaffolds
range: integer
required: false
gc:
name: gc
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: float
required: false
gene_count:
name: gene_count
from_schema: https://w3id.org/jgi/img_mysql_mbin
domain_of:
- bin
- bin_scaffolds
- semi_bin
- semi_bin_scaffolds
range: integer
required: false
scaf_domain:
name: scaf_domain
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_phylum:
name: scaf_phylum
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_class:
name: scaf_class
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_order:
name: scaf_order
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_family:
name: scaf_family
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_genus:
name: scaf_genus
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_species:
name: scaf_species
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_num_16s:
name: scaf_num_16s
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false
scaf_num_5s:
name: scaf_num_5s
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false
scaf_num_23s:
name: scaf_num_23s
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false
scaf_num_trna:
name: scaf_num_trna
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false
Induced
name: bin_scaffolds
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
bin_oid:
name: bin_oid
from_schema: https://w3id.org/jgi/img_mysql_mbin
alias: bin_oid
owner: bin_scaffolds
domain_of:
- bin
- bin_coverage
- bin_scaffolds
- semi_bin
- semi_bin_coverage
- semi_bin_scaffolds
- semi_lq
range: string
required: false
scaffold_oid:
name: scaffold_oid
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaffold_oid
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- ebin_scaffolds
- semi_bin_scaffolds
- semi_ebin_scaffolds
range: string
required: false
scaffold_length:
name: scaffold_length
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaffold_length
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- ebin_scaffolds
- semi_bin_scaffolds
- semi_ebin_scaffolds
range: integer
required: false
gc:
name: gc
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: gc
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: float
required: false
gene_count:
name: gene_count
from_schema: https://w3id.org/jgi/img_mysql_mbin
alias: gene_count
owner: bin_scaffolds
domain_of:
- bin
- bin_scaffolds
- semi_bin
- semi_bin_scaffolds
range: integer
required: false
scaf_domain:
name: scaf_domain
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_domain
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_phylum:
name: scaf_phylum
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_phylum
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_class:
name: scaf_class
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_class
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_order:
name: scaf_order
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_order
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_family:
name: scaf_family
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_family
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_genus:
name: scaf_genus
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_genus
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_species:
name: scaf_species
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_species
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: string
required: false
scaf_num_16s:
name: scaf_num_16s
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_num_16s
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false
scaf_num_5s:
name: scaf_num_5s
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_num_5s
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false
scaf_num_23s:
name: scaf_num_23s
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_num_23s
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false
scaf_num_trna:
name: scaf_num_trna
from_schema: https://w3id.org/jgi/img_mysql_mbin
rank: 1000
alias: scaf_num_trna
owner: bin_scaffolds
domain_of:
- bin_scaffolds
- semi_bin_scaffolds
range: integer
required: false