Class: Ebin

URI: img_mysql_mbin:Ebin

classDiagram class Ebin click Ebin href "../Ebin/" Ebin : avg_coverage Ebin : completeness Ebin : contamination Ebin : ebin_class Ebin : ebin_domain Ebin : ebin_family Ebin : ebin_genus Ebin : ebin_oid Ebin : ebin_order Ebin : ebin_phylum Ebin : ebin_species Ebin : external_link Ebin : methods Ebin : num_18s Ebin : num_28s Ebin : num_5s Ebin : processed_by Ebin : processed_date Ebin : scaffold_count Ebin : taxon_oid Ebin : total_bases

Slots

Name	Cardinality and Range	Inheritance
ebin_oid	0..1 String	direct
taxon_oid	0..1 Integer	direct
completeness	0..1 Float	direct
contamination	0..1 Float	direct
methods	0..1 String	direct
processed_by	0..1 Integer	direct
processed_date	0..1 Datetime	direct
total_bases	0..1 Integer	direct
ebin_domain	0..1 String	direct
ebin_phylum	0..1 String	direct
ebin_class	0..1 String	direct
ebin_order	0..1 String	direct
ebin_family	0..1 String	direct
ebin_genus	0..1 String	direct
ebin_species	0..1 String	direct
external_link	0..1 String	direct
scaffold_count	0..1 Integer	direct
num_5s	0..1 Integer	direct
num_18s	0..1 Integer	direct
num_28s	0..1 Integer	direct
avg_coverage	0..1 Float	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_mysql_mbin

Mappings

Mapping Type	Mapped Value
self	img_mysql_mbin:Ebin
native	img_mysql_mbin:Ebin

LinkML Source

Direct

name: ebin
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
  ebin_oid:
    name: ebin_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - ebin_ext_links
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - ebin_not_loaded_metagenomes
    - img_umag_bin_tarballs_02062024
    - not_loaded_metagenomes
    - semi_bin
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    - semi_lq
    range: integer
    required: false
  completeness:
    name: completeness
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  contamination:
    name: contamination
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  methods:
    name: methods
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: string
    required: false
  processed_by:
    name: processed_by
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: integer
    required: false
  processed_date:
    name: processed_date
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - not_loaded_metagenomes
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    range: datetime
    required: false
  total_bases:
    name: total_bases
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: integer
    required: false
  ebin_domain:
    name: ebin_domain
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_phylum:
    name: ebin_phylum
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_class:
    name: ebin_class
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_order:
    name: ebin_order
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_family:
    name: ebin_family
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_genus:
    name: ebin_genus
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_species:
    name: ebin_species
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  external_link:
    name: external_link
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: integer
    required: false
  num_5s:
    name: num_5s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - ebin_scaffolds
    - semi_bin
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_18s:
    name: num_18s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_28s:
    name: num_28s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  avg_coverage:
    name: avg_coverage
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - bin_coverage
    - ebin
    - semi_bin
    - semi_bin_coverage
    - semi_ebin
    range: float
    required: false

Induced

name: ebin
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
  ebin_oid:
    name: ebin_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_oid
    owner: ebin
    domain_of:
    - ebin
    - ebin_ext_links
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: taxon_oid
    owner: ebin
    domain_of:
    - bin
    - ebin
    - ebin_not_loaded_metagenomes
    - img_umag_bin_tarballs_02062024
    - not_loaded_metagenomes
    - semi_bin
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    - semi_lq
    range: integer
    required: false
  completeness:
    name: completeness
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: completeness
    owner: ebin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  contamination:
    name: contamination
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: contamination
    owner: ebin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  methods:
    name: methods
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: methods
    owner: ebin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: string
    required: false
  processed_by:
    name: processed_by
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: processed_by
    owner: ebin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: integer
    required: false
  processed_date:
    name: processed_date
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: processed_date
    owner: ebin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - not_loaded_metagenomes
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    range: datetime
    required: false
  total_bases:
    name: total_bases
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: total_bases
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: integer
    required: false
  ebin_domain:
    name: ebin_domain
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_domain
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_phylum:
    name: ebin_phylum
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_phylum
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_class:
    name: ebin_class
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_class
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_order:
    name: ebin_order
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_order
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_family:
    name: ebin_family
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_family
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_genus:
    name: ebin_genus
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_genus
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_species:
    name: ebin_species
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: ebin_species
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  external_link:
    name: external_link
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: external_link
    owner: ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaffold_count
    owner: ebin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: integer
    required: false
  num_5s:
    name: num_5s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: num_5s
    owner: ebin
    domain_of:
    - bin
    - ebin
    - ebin_scaffolds
    - semi_bin
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_18s:
    name: num_18s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: num_18s
    owner: ebin
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_28s:
    name: num_28s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    rank: 1000
    alias: num_28s
    owner: ebin
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  avg_coverage:
    name: avg_coverage
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: avg_coverage
    owner: ebin
    domain_of:
    - bin
    - bin_coverage
    - ebin
    - semi_bin
    - semi_bin_coverage
    - semi_ebin
    range: float
    required: false