Skip to content

Class: SemiBinScaffolds

URI: img_mysql_mbin:SemiBinScaffolds

classDiagram class SemiBinScaffolds click SemiBinScaffolds href "../SemiBinScaffolds/" SemiBinScaffolds : bin_oid SemiBinScaffolds : gc SemiBinScaffolds : gene_count SemiBinScaffolds : scaf_class SemiBinScaffolds : scaf_domain SemiBinScaffolds : scaf_family SemiBinScaffolds : scaf_genus SemiBinScaffolds : scaf_num_16s SemiBinScaffolds : scaf_num_23s SemiBinScaffolds : scaf_num_5s SemiBinScaffolds : scaf_num_trna SemiBinScaffolds : scaf_order SemiBinScaffolds : scaf_phylum SemiBinScaffolds : scaf_species SemiBinScaffolds : scaffold_length SemiBinScaffolds : scaffold_oid

Slots

Name Cardinality and Range Description Inheritance
bin_oid 0..1
String		 direct
scaffold_oid 0..1
String		 direct
scaffold_length 0..1
Integer		 direct
gc 0..1
Float		 direct
gene_count 0..1
Integer		 direct
scaf_domain 0..1
String		 direct
scaf_phylum 0..1
String		 direct
scaf_class 0..1
String		 direct
scaf_order 0..1
String		 direct
scaf_family 0..1
String		 direct
scaf_genus 0..1
String		 direct
scaf_species 0..1
String		 direct
scaf_num_16s 0..1
Integer		 direct
scaf_num_5s 0..1
Integer		 direct
scaf_num_23s 0..1
Integer		 direct
scaf_num_trna 0..1
Integer		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_mysql_mbin

Mappings

Mapping Type Mapped Value
self img_mysql_mbin:SemiBinScaffolds
native img_mysql_mbin:SemiBinScaffolds

LinkML Source

Direct

name: semi_bin_scaffolds
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
  bin_oid:
    name: bin_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - bin_coverage
    - bin_scaffolds
    - semi_bin
    - semi_bin_coverage
    - semi_bin_scaffolds
    - semi_lq
    range: string
    required: false
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - ebin_scaffolds
    - semi_bin_scaffolds
    - semi_ebin_scaffolds
    range: string
    required: false
  scaffold_length:
    name: scaffold_length
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - ebin_scaffolds
    - semi_bin_scaffolds
    - semi_ebin_scaffolds
    range: integer
    required: false
  gc:
    name: gc
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: float
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - bin_scaffolds
    - semi_bin
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_domain:
    name: scaf_domain
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_phylum:
    name: scaf_phylum
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_class:
    name: scaf_class
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_order:
    name: scaf_order
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_family:
    name: scaf_family
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_genus:
    name: scaf_genus
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_species:
    name: scaf_species
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_num_16s:
    name: scaf_num_16s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_num_5s:
    name: scaf_num_5s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_num_23s:
    name: scaf_num_23s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_num_trna:
    name: scaf_num_trna
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false

Induced

name: semi_bin_scaffolds
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
  bin_oid:
    name: bin_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: bin_oid
    owner: semi_bin_scaffolds
    domain_of:
    - bin
    - bin_coverage
    - bin_scaffolds
    - semi_bin
    - semi_bin_coverage
    - semi_bin_scaffolds
    - semi_lq
    range: string
    required: false
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaffold_oid
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - ebin_scaffolds
    - semi_bin_scaffolds
    - semi_ebin_scaffolds
    range: string
    required: false
  scaffold_length:
    name: scaffold_length
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaffold_length
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - ebin_scaffolds
    - semi_bin_scaffolds
    - semi_ebin_scaffolds
    range: integer
    required: false
  gc:
    name: gc
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: gc
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: float
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: gene_count
    owner: semi_bin_scaffolds
    domain_of:
    - bin
    - bin_scaffolds
    - semi_bin
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_domain:
    name: scaf_domain
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_domain
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_phylum:
    name: scaf_phylum
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_phylum
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_class:
    name: scaf_class
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_class
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_order:
    name: scaf_order
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_order
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_family:
    name: scaf_family
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_family
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_genus:
    name: scaf_genus
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_genus
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_species:
    name: scaf_species
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_species
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: string
    required: false
  scaf_num_16s:
    name: scaf_num_16s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_num_16s
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_num_5s:
    name: scaf_num_5s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_num_5s
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_num_23s:
    name: scaf_num_23s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_num_23s
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false
  scaf_num_trna:
    name: scaf_num_trna
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaf_num_trna
    owner: semi_bin_scaffolds
    domain_of:
    - bin_scaffolds
    - semi_bin_scaffolds
    range: integer
    required: false