Class: SemiEbin

URI: img_mysql_mbin:SemiEbin

classDiagram class SemiEbin click SemiEbin href "../SemiEbin/" SemiEbin : avg_coverage SemiEbin : completeness SemiEbin : contamination SemiEbin : ebin_class SemiEbin : ebin_domain SemiEbin : ebin_family SemiEbin : ebin_genus SemiEbin : ebin_oid SemiEbin : ebin_order SemiEbin : ebin_phylum SemiEbin : ebin_species SemiEbin : external_link SemiEbin : has_datafile SemiEbin : in_portal SemiEbin : methods SemiEbin : num_18s SemiEbin : num_28s SemiEbin : num_5s SemiEbin : processed_by SemiEbin : processed_date SemiEbin : scaffold_count SemiEbin : taxon_oid SemiEbin : total_bases

Slots

Name	Cardinality and Range	Inheritance
ebin_oid	0..1 String	direct
taxon_oid	0..1 Integer	direct
completeness	0..1 Float	direct
contamination	0..1 Float	direct
methods	0..1 String	direct
processed_by	0..1 Integer	direct
processed_date	0..1 Datetime	direct
total_bases	0..1 Integer	direct
ebin_domain	0..1 String	direct
ebin_phylum	0..1 String	direct
ebin_class	0..1 String	direct
ebin_order	0..1 String	direct
ebin_family	0..1 String	direct
ebin_genus	0..1 String	direct
ebin_species	0..1 String	direct
external_link	0..1 String	direct
scaffold_count	0..1 Integer	direct
num_5s	0..1 Integer	direct
num_18s	0..1 Integer	direct
num_28s	0..1 Integer	direct
avg_coverage	0..1 Float	direct
has_datafile	0..1 String	direct
in_portal	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_mysql_mbin

Mappings

Mapping Type	Mapped Value
self	img_mysql_mbin:SemiEbin
native	img_mysql_mbin:SemiEbin

LinkML Source

Direct

name: semi_ebin
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
  ebin_oid:
    name: ebin_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - ebin_ext_links
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - ebin_not_loaded_metagenomes
    - img_umag_bin_tarballs_02062024
    - not_loaded_metagenomes
    - semi_bin
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    - semi_lq
    range: integer
    required: false
  completeness:
    name: completeness
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  contamination:
    name: contamination
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  methods:
    name: methods
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: string
    required: false
  processed_by:
    name: processed_by
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: integer
    required: false
  processed_date:
    name: processed_date
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - not_loaded_metagenomes
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    range: datetime
    required: false
  total_bases:
    name: total_bases
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: integer
    required: false
  ebin_domain:
    name: ebin_domain
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_phylum:
    name: ebin_phylum
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_class:
    name: ebin_class
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_order:
    name: ebin_order
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_family:
    name: ebin_family
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_genus:
    name: ebin_genus
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_species:
    name: ebin_species
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  external_link:
    name: external_link
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: integer
    required: false
  num_5s:
    name: num_5s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - ebin
    - ebin_scaffolds
    - semi_bin
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_18s:
    name: num_18s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_28s:
    name: num_28s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  avg_coverage:
    name: avg_coverage
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - bin
    - bin_coverage
    - ebin
    - semi_bin
    - semi_bin_coverage
    - semi_ebin
    range: float
    required: false
  has_datafile:
    name: has_datafile
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - semi_bin
    - semi_ebin
    range: string
    required: false
  in_portal:
    name: in_portal
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    domain_of:
    - semi_bin
    - semi_ebin
    range: string
    required: false

Induced

name: semi_ebin
from_schema: https://w3id.org/jgi/img_mysql_mbin
attributes:
  ebin_oid:
    name: ebin_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_oid
    owner: semi_ebin
    domain_of:
    - ebin
    - ebin_ext_links
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: taxon_oid
    owner: semi_ebin
    domain_of:
    - bin
    - ebin
    - ebin_not_loaded_metagenomes
    - img_umag_bin_tarballs_02062024
    - not_loaded_metagenomes
    - semi_bin
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    - semi_lq
    range: integer
    required: false
  completeness:
    name: completeness
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: completeness
    owner: semi_ebin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  contamination:
    name: contamination
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: contamination
    owner: semi_ebin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: float
    required: false
  methods:
    name: methods
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: methods
    owner: semi_ebin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: string
    required: false
  processed_by:
    name: processed_by
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: processed_by
    owner: semi_ebin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - semi_ebin
    - semi_ebin_not_loaded
    range: integer
    required: false
  processed_date:
    name: processed_date
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: processed_date
    owner: semi_ebin
    domain_of:
    - ebin
    - ebin_not_loaded_metagenomes
    - not_loaded_metagenomes
    - semi_bin_not_loaded
    - semi_ebin
    - semi_ebin_not_loaded
    range: datetime
    required: false
  total_bases:
    name: total_bases
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: total_bases
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: integer
    required: false
  ebin_domain:
    name: ebin_domain
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_domain
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_phylum:
    name: ebin_phylum
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_phylum
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_class:
    name: ebin_class
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_class
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_order:
    name: ebin_order
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_order
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_family:
    name: ebin_family
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_family
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_genus:
    name: ebin_genus
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_genus
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  ebin_species:
    name: ebin_species
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: ebin_species
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  external_link:
    name: external_link
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: external_link
    owner: semi_ebin
    domain_of:
    - ebin
    - semi_ebin
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: scaffold_count
    owner: semi_ebin
    domain_of:
    - bin
    - ebin
    - semi_bin
    - semi_ebin
    range: integer
    required: false
  num_5s:
    name: num_5s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: num_5s
    owner: semi_ebin
    domain_of:
    - bin
    - ebin
    - ebin_scaffolds
    - semi_bin
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_18s:
    name: num_18s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: num_18s
    owner: semi_ebin
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  num_28s:
    name: num_28s
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: num_28s
    owner: semi_ebin
    domain_of:
    - ebin
    - ebin_scaffolds
    - semi_ebin
    - semi_ebin_scaffolds
    range: integer
    required: false
  avg_coverage:
    name: avg_coverage
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: avg_coverage
    owner: semi_ebin
    domain_of:
    - bin
    - bin_coverage
    - ebin
    - semi_bin
    - semi_bin_coverage
    - semi_ebin
    range: float
    required: false
  has_datafile:
    name: has_datafile
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: has_datafile
    owner: semi_ebin
    domain_of:
    - semi_bin
    - semi_ebin
    range: string
    required: false
  in_portal:
    name: in_portal
    from_schema: https://w3id.org/jgi/img_mysql_mbin
    alias: in_portal
    owner: semi_ebin
    domain_of:
    - semi_bin
    - semi_ebin
    range: string
    required: false