Skip to content

Class: MsExperiment

URI: img_proteome:MsExperiment

classDiagram class MsExperiment click MsExperiment href "../MsExperiment/" MsExperiment : add_date MsExperiment : description MsExperiment : exp_contact MsExperiment : exp_date MsExperiment : exp_name MsExperiment : exp_oid MsExperiment : ext_accession MsExperiment : is_public MsExperiment : method_type MsExperiment : notes MsExperiment : peptide_count MsExperiment : project_name MsExperiment : protein_count MsExperiment : spectra_count

Slots

Name Cardinality and Range Description Inheritance
exp_oid 0..1
Integer		 direct
project_name 0..1
String		 direct
exp_name 0..1
String		 direct
description 0..1
String		 direct
ext_accession 0..1
String		 direct
exp_date 0..1
String		 direct
exp_contact 0..1
String		 direct
method_type 0..1
String		 direct
protein_count 0..1
Integer		 direct
peptide_count 0..1
Integer		 direct
spectra_count 0..1
Integer		 direct
add_date 0..1
Datetime		 direct
notes 0..1
String		 direct
is_public 0..1
String		 direct

Usages

used by used in type used
MsExperimentExtLinks exp_oid range MsExperiment
MsExperimentSop exp_oid range MsExperiment
MsPeptide experiment range MsExperiment
MsProtein experiment range MsExperiment
MsSample experiment range MsExperiment

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_proteome

Mappings

Mapping Type Mapped Value
self img_proteome:MsExperiment
native img_proteome:MsExperiment

LinkML Source

Direct

name: ms_experiment
from_schema: https://w3id.org/jgi/img_proteome
attributes:
  exp_oid:
    name: exp_oid
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    - ms_experiment_ext_links
    - ms_experiment_publications
    - ms_experiment_sop
    range: integer
    required: false
  project_name:
    name: project_name
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: string
    required: false
  exp_name:
    name: exp_name
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    - ms_protein
    - ms_protein_old
    - ms_sample
    range: string
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: string
    required: false
  exp_date:
    name: exp_date
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: string
    required: false
  exp_contact:
    name: exp_contact
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: string
    required: false
  method_type:
    name: method_type
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: string
    required: false
  protein_count:
    name: protein_count
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: integer
    required: false
  peptide_count:
    name: peptide_count
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: integer
    required: false
  spectra_count:
    name: spectra_count
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: integer
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: datetime
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_experiment
    range: string
    required: false

Induced

name: ms_experiment
from_schema: https://w3id.org/jgi/img_proteome
attributes:
  exp_oid:
    name: exp_oid
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: exp_oid
    owner: ms_experiment
    domain_of:
    - ms_experiment
    - ms_experiment_ext_links
    - ms_experiment_publications
    - ms_experiment_sop
    range: integer
    required: false
  project_name:
    name: project_name
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: project_name
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: string
    required: false
  exp_name:
    name: exp_name
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: exp_name
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: description
    owner: ms_experiment
    domain_of:
    - ms_experiment
    - ms_protein
    - ms_protein_old
    - ms_sample
    range: string
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: ext_accession
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: string
    required: false
  exp_date:
    name: exp_date
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: exp_date
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: string
    required: false
  exp_contact:
    name: exp_contact
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: exp_contact
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: string
    required: false
  method_type:
    name: method_type
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: method_type
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: string
    required: false
  protein_count:
    name: protein_count
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: protein_count
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: integer
    required: false
  peptide_count:
    name: peptide_count
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: peptide_count
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: integer
    required: false
  spectra_count:
    name: spectra_count
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: spectra_count
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: integer
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: add_date
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: datetime
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: notes
    owner: ms_experiment
    domain_of:
    - ms_experiment
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: is_public
    owner: ms_experiment
    domain_of:
    - ms_experiment
    range: string
    required: false