Class: MsPeptide

URI: img_proteome:MsPeptide

classDiagram class MsPeptide click MsPeptide href "../MsPeptide/" MsPeptide : calc_mh MsPeptide : end_coord MsPeptide : experiment MsPeptide --> "0..1" MsExperiment : experiment click MsExperiment href "../MsExperiment/" MsPeptide : filter_pass_obs MsPeptide : first_aa MsPeptide : frame MsPeptide : ion_perc MsPeptide : is_unique MsPeptide : mass_tag_id MsPeptide : match_spec_cnt MsPeptide : max_deltcn MsPeptide : max_pep_prob MsPeptide : max_xcorr MsPeptide : notes MsPeptide : obs_mh MsPeptide : peptide_oid MsPeptide : peptide_seq MsPeptide : prev_aa MsPeptide : protein MsPeptide --> "0..1" MsProtein : protein click MsProtein href "../MsProtein/" MsPeptide : sample MsPeptide : sp_rank MsPeptide : sp_score MsPeptide : spectrum_ref MsPeptide : start_coord MsPeptide : total_intensity MsPeptide : tryptic_state

Slots

Name	Cardinality and Range	Description	Inheritance
peptide_oid	0..1 Integer		direct
mass_tag_id	0..1 String		direct
protein	0..1 MsProtein	Foreign key to ms_protein	direct
peptide_seq	0..1 String		direct
start_coord	0..1 Integer		direct
end_coord	0..1 Integer		direct
frame	0..1 Integer		direct
spectrum_ref	0..1 String		direct
tryptic_state	0..1 String		direct
first_aa	0..1 String		direct
prev_aa	0..1 String		direct
max_xcorr	0..1 Float		direct
max_deltcn	0..1 Float		direct
max_pep_prob	0..1 Float		direct
filter_pass_obs	0..1 Integer		direct
obs_mh	0..1 Float		direct
calc_mh	0..1 Float		direct
ion_perc	0..1 Float		direct
match_spec_cnt	0..1 Integer		direct
notes	0..1 String		direct
experiment	0..1 MsExperiment	Foreign key to ms_experiment	direct
sample	0..1 Integer		direct
sp_score	0..1 Float		direct
sp_rank	0..1 Integer		direct
is_unique	0..1 String		direct
total_intensity	0..1 Float		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_proteome

Mappings

Mapping Type	Mapped Value
self	img_proteome:MsPeptide
native	img_proteome:MsPeptide

LinkML Source

Direct

name: ms_peptide
from_schema: https://w3id.org/jgi/img_proteome
attributes:
  peptide_oid:
    name: peptide_oid
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  mass_tag_id:
    name: mass_tag_id
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  protein:
    name: protein
    description: Foreign key to ms_protein
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: ms_protein
    required: false
  peptide_seq:
    name: peptide_seq
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  frame:
    name: frame
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  spectrum_ref:
    name: spectrum_ref
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  tryptic_state:
    name: tryptic_state
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  first_aa:
    name: first_aa
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  prev_aa:
    name: prev_aa
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  max_xcorr:
    name: max_xcorr
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  max_deltcn:
    name: max_deltcn
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  max_pep_prob:
    name: max_pep_prob
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  filter_pass_obs:
    name: filter_pass_obs
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  obs_mh:
    name: obs_mh
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  calc_mh:
    name: calc_mh
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  ion_perc:
    name: ion_perc
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  match_spec_cnt:
    name: match_spec_cnt
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_proteome
    domain_of:
    - ms_experiment
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    range: string
    required: false
  experiment:
    name: experiment
    description: Foreign key to ms_experiment
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    - ms_sample
    range: ms_experiment
    required: false
  sample:
    name: sample
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    range: integer
    required: false
  sp_score:
    name: sp_score
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  sp_rank:
    name: sp_rank
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  is_unique:
    name: is_unique
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  total_intensity:
    name: total_intensity
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false

Induced

name: ms_peptide
from_schema: https://w3id.org/jgi/img_proteome
attributes:
  peptide_oid:
    name: peptide_oid
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: peptide_oid
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  mass_tag_id:
    name: mass_tag_id
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: mass_tag_id
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  protein:
    name: protein
    description: Foreign key to ms_protein
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: protein
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: ms_protein
    required: false
  peptide_seq:
    name: peptide_seq
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: peptide_seq
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: start_coord
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: end_coord
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  frame:
    name: frame
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: frame
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  spectrum_ref:
    name: spectrum_ref
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: spectrum_ref
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  tryptic_state:
    name: tryptic_state
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: tryptic_state
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  first_aa:
    name: first_aa
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: first_aa
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  prev_aa:
    name: prev_aa
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: prev_aa
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  max_xcorr:
    name: max_xcorr
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: max_xcorr
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  max_deltcn:
    name: max_deltcn
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: max_deltcn
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  max_pep_prob:
    name: max_pep_prob
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: max_pep_prob
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  filter_pass_obs:
    name: filter_pass_obs
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: filter_pass_obs
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  obs_mh:
    name: obs_mh
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: obs_mh
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  calc_mh:
    name: calc_mh
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: calc_mh
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  ion_perc:
    name: ion_perc
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: ion_perc
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  match_spec_cnt:
    name: match_spec_cnt
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: match_spec_cnt
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_proteome
    alias: notes
    owner: ms_peptide
    domain_of:
    - ms_experiment
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    range: string
    required: false
  experiment:
    name: experiment
    description: Foreign key to ms_experiment
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: experiment
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    - ms_sample
    range: ms_experiment
    required: false
  sample:
    name: sample
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: sample
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_old
    range: integer
    required: false
  sp_score:
    name: sp_score
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: sp_score
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false
  sp_rank:
    name: sp_rank
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: sp_rank
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: integer
    required: false
  is_unique:
    name: is_unique
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: is_unique
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: string
    required: false
  total_intensity:
    name: total_intensity
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: total_intensity
    owner: ms_peptide
    domain_of:
    - ms_peptide
    - ms_peptide_old
    range: float
    required: false