Class: MsPeptideOld
URI: img_proteome:MsPeptideOld
classDiagram
class MsPeptideOld
click MsPeptideOld href "../MsPeptideOld/"
MsPeptideOld : calc_mh
MsPeptideOld : end_coord
MsPeptideOld : experiment
MsPeptideOld : filter_pass_obs
MsPeptideOld : first_aa
MsPeptideOld : frame
MsPeptideOld : ion_perc
MsPeptideOld : is_unique
MsPeptideOld : mass_tag_id
MsPeptideOld : match_spec_cnt
MsPeptideOld : max_deltcn
MsPeptideOld : max_pep_prob
MsPeptideOld : max_xcorr
MsPeptideOld : notes
MsPeptideOld : obs_mh
MsPeptideOld : peptide_oid
MsPeptideOld : peptide_seq
MsPeptideOld : prev_aa
MsPeptideOld : protein
MsPeptideOld : sample
MsPeptideOld : sp_rank
MsPeptideOld : sp_score
MsPeptideOld : spectrum_ref
MsPeptideOld : start_coord
MsPeptideOld : total_intensity
MsPeptideOld : tryptic_state
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| peptide_oid | 0..1 Integer |
direct | |
| mass_tag_id | 0..1 String |
direct | |
| protein | 0..1 Integer |
direct | |
| peptide_seq | 0..1 String |
direct | |
| start_coord | 0..1 Integer |
direct | |
| end_coord | 0..1 Integer |
direct | |
| frame | 0..1 Integer |
direct | |
| spectrum_ref | 0..1 String |
direct | |
| tryptic_state | 0..1 String |
direct | |
| first_aa | 0..1 String |
direct | |
| prev_aa | 0..1 String |
direct | |
| max_xcorr | 0..1 Float |
direct | |
| max_deltcn | 0..1 Float |
direct | |
| max_pep_prob | 0..1 Float |
direct | |
| filter_pass_obs | 0..1 Integer |
direct | |
| obs_mh | 0..1 Float |
direct | |
| calc_mh | 0..1 Float |
direct | |
| ion_perc | 0..1 Float |
direct | |
| match_spec_cnt | 0..1 Integer |
direct | |
| notes | 0..1 String |
direct | |
| experiment | 0..1 Integer |
direct | |
| sample | 0..1 Integer |
direct | |
| sp_score | 0..1 Float |
direct | |
| sp_rank | 0..1 Integer |
direct | |
| is_unique | 0..1 String |
direct | |
| total_intensity | 0..1 Float |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_proteome
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_proteome:MsPeptideOld |
| native | img_proteome:MsPeptideOld |
LinkML Source
Direct
name: ms_peptide_old
from_schema: https://w3id.org/jgi/img_proteome
attributes:
peptide_oid:
name: peptide_oid
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
mass_tag_id:
name: mass_tag_id
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
protein:
name: protein
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
peptide_seq:
name: peptide_seq
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
start_coord:
name: start_coord
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_img_genes
- ms_protein_img_genes_old
- ms_protein_old
range: integer
required: false
end_coord:
name: end_coord
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_img_genes
- ms_protein_img_genes_old
- ms_protein_old
range: integer
required: false
frame:
name: frame
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
spectrum_ref:
name: spectrum_ref
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
tryptic_state:
name: tryptic_state
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
first_aa:
name: first_aa
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
prev_aa:
name: prev_aa
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
max_xcorr:
name: max_xcorr
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
max_deltcn:
name: max_deltcn
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
max_pep_prob:
name: max_pep_prob
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
filter_pass_obs:
name: filter_pass_obs
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
obs_mh:
name: obs_mh
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
calc_mh:
name: calc_mh
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
ion_perc:
name: ion_perc
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
match_spec_cnt:
name: match_spec_cnt
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
notes:
name: notes
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_experiment
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_old
range: string
required: false
experiment:
name: experiment
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_old
- ms_sample
range: integer
required: false
sample:
name: sample
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_old
range: integer
required: false
sp_score:
name: sp_score
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
sp_rank:
name: sp_rank
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
is_unique:
name: is_unique
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
total_intensity:
name: total_intensity
from_schema: https://w3id.org/jgi/img_proteome
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
Induced
name: ms_peptide_old
from_schema: https://w3id.org/jgi/img_proteome
attributes:
peptide_oid:
name: peptide_oid
from_schema: https://w3id.org/jgi/img_proteome
alias: peptide_oid
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
mass_tag_id:
name: mass_tag_id
from_schema: https://w3id.org/jgi/img_proteome
alias: mass_tag_id
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
protein:
name: protein
from_schema: https://w3id.org/jgi/img_proteome
alias: protein
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
peptide_seq:
name: peptide_seq
from_schema: https://w3id.org/jgi/img_proteome
alias: peptide_seq
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
start_coord:
name: start_coord
from_schema: https://w3id.org/jgi/img_proteome
alias: start_coord
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_img_genes
- ms_protein_img_genes_old
- ms_protein_old
range: integer
required: false
end_coord:
name: end_coord
from_schema: https://w3id.org/jgi/img_proteome
alias: end_coord
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_img_genes
- ms_protein_img_genes_old
- ms_protein_old
range: integer
required: false
frame:
name: frame
from_schema: https://w3id.org/jgi/img_proteome
alias: frame
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
spectrum_ref:
name: spectrum_ref
from_schema: https://w3id.org/jgi/img_proteome
alias: spectrum_ref
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
tryptic_state:
name: tryptic_state
from_schema: https://w3id.org/jgi/img_proteome
alias: tryptic_state
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
first_aa:
name: first_aa
from_schema: https://w3id.org/jgi/img_proteome
alias: first_aa
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
prev_aa:
name: prev_aa
from_schema: https://w3id.org/jgi/img_proteome
alias: prev_aa
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
max_xcorr:
name: max_xcorr
from_schema: https://w3id.org/jgi/img_proteome
alias: max_xcorr
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
max_deltcn:
name: max_deltcn
from_schema: https://w3id.org/jgi/img_proteome
alias: max_deltcn
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
max_pep_prob:
name: max_pep_prob
from_schema: https://w3id.org/jgi/img_proteome
alias: max_pep_prob
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
filter_pass_obs:
name: filter_pass_obs
from_schema: https://w3id.org/jgi/img_proteome
alias: filter_pass_obs
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
obs_mh:
name: obs_mh
from_schema: https://w3id.org/jgi/img_proteome
alias: obs_mh
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
calc_mh:
name: calc_mh
from_schema: https://w3id.org/jgi/img_proteome
alias: calc_mh
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
ion_perc:
name: ion_perc
from_schema: https://w3id.org/jgi/img_proteome
alias: ion_perc
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
match_spec_cnt:
name: match_spec_cnt
from_schema: https://w3id.org/jgi/img_proteome
alias: match_spec_cnt
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
notes:
name: notes
from_schema: https://w3id.org/jgi/img_proteome
alias: notes
owner: ms_peptide_old
domain_of:
- ms_experiment
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_old
range: string
required: false
experiment:
name: experiment
from_schema: https://w3id.org/jgi/img_proteome
alias: experiment
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_old
- ms_sample
range: integer
required: false
sample:
name: sample
from_schema: https://w3id.org/jgi/img_proteome
alias: sample
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
- ms_protein
- ms_protein_old
range: integer
required: false
sp_score:
name: sp_score
from_schema: https://w3id.org/jgi/img_proteome
alias: sp_score
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false
sp_rank:
name: sp_rank
from_schema: https://w3id.org/jgi/img_proteome
alias: sp_rank
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: integer
required: false
is_unique:
name: is_unique
from_schema: https://w3id.org/jgi/img_proteome
alias: is_unique
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: string
required: false
total_intensity:
name: total_intensity
from_schema: https://w3id.org/jgi/img_proteome
alias: total_intensity
owner: ms_peptide_old
domain_of:
- ms_peptide
- ms_peptide_old
range: float
required: false