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Class: MsProteinImgGenes

URI: img_proteome:MsProteinImgGenes

classDiagram class MsProteinImgGenes click MsProteinImgGenes href "../MsProteinImgGenes/" MsProteinImgGenes : comments MsProteinImgGenes : end_coord MsProteinImgGenes : gene MsProteinImgGenes : genome MsProteinImgGenes : mod_date MsProteinImgGenes : protein_oid MsProteinImgGenes --> "0..1" MsProtein : protein_oid click MsProtein href "../MsProtein/" MsProteinImgGenes : start_coord

Slots

Name Cardinality and Range Description Inheritance
protein_oid 0..1
MsProtein		 Foreign key to ms_protein direct
gene 0..1
Integer		 direct
genome 0..1
Integer		 direct
start_coord 0..1
Integer		 direct
end_coord 0..1
Integer		 direct
mod_date 0..1
Datetime		 direct
comments 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_proteome

Mappings

Mapping Type Mapped Value
self img_proteome:MsProteinImgGenes
native img_proteome:MsProteinImgGenes

LinkML Source

Direct

name: ms_protein_img_genes
from_schema: https://w3id.org/jgi/img_proteome
attributes:
  protein_oid:
    name: protein_oid
    description: Foreign key to ms_protein
    from_schema: https://w3id.org/jgi/img_proteome
    domain_of:
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: ms_protein
    required: false
  gene:
    name: gene
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: integer
    required: false
  genome:
    name: genome
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_proteome
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_proteome
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: datetime
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: string
    required: false

Induced

name: ms_protein_img_genes
from_schema: https://w3id.org/jgi/img_proteome
attributes:
  protein_oid:
    name: protein_oid
    description: Foreign key to ms_protein
    from_schema: https://w3id.org/jgi/img_proteome
    alias: protein_oid
    owner: ms_protein_img_genes
    domain_of:
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: ms_protein
    required: false
  gene:
    name: gene
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: gene
    owner: ms_protein_img_genes
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: integer
    required: false
  genome:
    name: genome
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: genome
    owner: ms_protein_img_genes
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_proteome
    alias: start_coord
    owner: ms_protein_img_genes
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_proteome
    alias: end_coord
    owner: ms_protein_img_genes
    domain_of:
    - ms_peptide
    - ms_peptide_old
    - ms_protein
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    - ms_protein_old
    range: integer
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: mod_date
    owner: ms_protein_img_genes
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: datetime
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_proteome
    rank: 1000
    alias: comments
    owner: ms_protein_img_genes
    domain_of:
    - ms_protein_img_genes
    - ms_protein_img_genes_old
    range: string
    required: false