Class: RnaseqDataset

URI: img_rnaseq:RnaseqDataset

classDiagram class RnaseqDataset click RnaseqDataset href "../RnaseqDataset/" RnaseqDataset : add_date RnaseqDataset : analysis_project_id RnaseqDataset : as_read_count RnaseqDataset : combined_assembly_flag RnaseqDataset : dataset_oid RnaseqDataset : dataset_type RnaseqDataset : er_project_id RnaseqDataset : er_sample_id RnaseqDataset : gold_id RnaseqDataset : in_file RnaseqDataset : intergenic_flag RnaseqDataset : is_public RnaseqDataset : its_ap_id RnaseqDataset : its_sp_id RnaseqDataset : jgi_rnd_flag RnaseqDataset : notes RnaseqDataset : obsolete_flag RnaseqDataset : pem_value RnaseqDataset : quality RnaseqDataset : reference_taxon_oid RnaseqDataset : release_date RnaseqDataset : sample_oid RnaseqDataset : submission_id

Slots

Name	Cardinality and Range	Inheritance
dataset_oid	0..1 Float	direct
sample_oid	0..1 String	direct
reference_taxon_oid	0..1 Float	direct
notes	0..1 String	direct
gold_id	0..1 String	direct
er_project_id	0..1 Float	direct
er_sample_id	0..1 Float	direct
analysis_project_id	0..1 String	direct
add_date	0..1 Datetime	direct
is_public	0..1 String	direct
submission_id	0..1 Float	direct
in_file	0..1 String	direct
obsolete_flag	0..1 String	direct
dataset_type	0..1 String	direct
release_date	0..1 Datetime	direct
jgi_rnd_flag	0..1 String	direct
its_ap_id	0..1 Float	direct
its_sp_id	0..1 Float	direct
combined_assembly_flag	0..1 String	direct
intergenic_flag	0..1 String	direct
quality	0..1 String	direct
pem_value	0..1 Float	direct
as_read_count	0..1 Integer	direct

Usages

used by	used in	type	used
RnaseqDatasetStats	dataset_oid	range	RnaseqDataset

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_rnaseq

Mappings

Mapping Type	Mapped Value
self	img_rnaseq:RnaseqDataset
native	img_rnaseq:RnaseqDataset

LinkML Source

Direct

name: rnaseq_dataset
from_schema: https://w3id.org/jgi/img_rnaseq
attributes:
  dataset_oid:
    name: dataset_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_dataset_stats
    - rnaseq_sample
    range: float
    required: false
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    - rnaseq_sample_ext_links
    - rnaseq_sample_sop
    range: string
    required: false
  reference_taxon_oid:
    name: reference_taxon_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  er_project_id:
    name: er_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  er_sample_id:
    name: er_sample_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: datetime
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: float
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  dataset_type:
    name: dataset_type
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: datetime
    required: false
  jgi_rnd_flag:
    name: jgi_rnd_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  its_ap_id:
    name: its_ap_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  its_sp_id:
    name: its_sp_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  combined_assembly_flag:
    name: combined_assembly_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  intergenic_flag:
    name: intergenic_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  quality:
    name: quality
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  pem_value:
    name: pem_value
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  as_read_count:
    name: as_read_count
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_dataset
    range: integer
    required: false

Induced

name: rnaseq_dataset
from_schema: https://w3id.org/jgi/img_rnaseq
attributes:
  dataset_oid:
    name: dataset_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: dataset_oid
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_dataset_stats
    - rnaseq_sample
    range: float
    required: false
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: sample_oid
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    - rnaseq_sample_ext_links
    - rnaseq_sample_sop
    range: string
    required: false
  reference_taxon_oid:
    name: reference_taxon_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: reference_taxon_oid
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: notes
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: gold_id
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  er_project_id:
    name: er_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: er_project_id
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  er_sample_id:
    name: er_sample_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: er_sample_id
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: analysis_project_id
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: add_date
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: datetime
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: is_public
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: submission_id
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: float
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: in_file
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: obsolete_flag
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  dataset_type:
    name: dataset_type
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: dataset_type
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: release_date
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: datetime
    required: false
  jgi_rnd_flag:
    name: jgi_rnd_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: jgi_rnd_flag
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  its_ap_id:
    name: its_ap_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: its_ap_id
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  its_sp_id:
    name: its_sp_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: its_sp_id
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  combined_assembly_flag:
    name: combined_assembly_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: combined_assembly_flag
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  intergenic_flag:
    name: intergenic_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: intergenic_flag
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  quality:
    name: quality
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: quality
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: string
    required: false
  pem_value:
    name: pem_value
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: pem_value
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: float
    required: false
  as_read_count:
    name: as_read_count
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: as_read_count
    owner: rnaseq_dataset
    domain_of:
    - rnaseq_dataset
    range: integer
    required: false