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Class: RnaseqExperiment

URI: img_rnaseq:RnaseqExperiment

classDiagram class RnaseqExperiment click RnaseqExperiment href "../RnaseqExperiment/" RnaseqExperiment : add_date RnaseqExperiment : description RnaseqExperiment : exp_contact RnaseqExperiment : exp_date RnaseqExperiment : exp_name RnaseqExperiment : exp_oid RnaseqExperiment : ext_accession RnaseqExperiment : in_file RnaseqExperiment : is_public RnaseqExperiment : method_type RnaseqExperiment : notes RnaseqExperiment : project_name RnaseqExperiment : submission_id

Slots

Name Cardinality and Range Description Inheritance
exp_oid 0..1
Integer		 direct
project_name 0..1
String		 direct
exp_name 0..1
String		 direct
description 0..1
String		 direct
ext_accession 0..1
String		 direct
exp_date 0..1
String		 direct
exp_contact 0..1
String		 direct
method_type 0..1
String		 direct
add_date 0..1
Datetime		 direct
notes 0..1
String		 direct
is_public 0..1
String		 direct
submission_id 0..1
Integer		 direct
in_file 0..1
String		 direct

Usages

used by used in type used
RnaseqExperimentExtLinks exp_oid range RnaseqExperiment
RnaseqExperimentPubs exp_oid range RnaseqExperiment
RnaseqExperimentSop exp_oid range RnaseqExperiment
RnaseqExperimentStats exp_oid range RnaseqExperiment

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_rnaseq

Mappings

Mapping Type Mapped Value
self img_rnaseq:RnaseqExperiment
native img_rnaseq:RnaseqExperiment

LinkML Source

Direct

name: rnaseq_experiment
from_schema: https://w3id.org/jgi/img_rnaseq
attributes:
  exp_oid:
    name: exp_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    - rnaseq_experiment_ext_links
    - rnaseq_experiment_pubs
    - rnaseq_experiment_sop
    - rnaseq_experiment_stats
    range: integer
    required: false
  project_name:
    name: project_name
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  exp_name:
    name: exp_name
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  exp_date:
    name: exp_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  exp_contact:
    name: exp_contact
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  method_type:
    name: method_type
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: datetime
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: integer
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false

Induced

name: rnaseq_experiment
from_schema: https://w3id.org/jgi/img_rnaseq
attributes:
  exp_oid:
    name: exp_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: exp_oid
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    - rnaseq_experiment_ext_links
    - rnaseq_experiment_pubs
    - rnaseq_experiment_sop
    - rnaseq_experiment_stats
    range: integer
    required: false
  project_name:
    name: project_name
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: project_name
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  exp_name:
    name: exp_name
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: exp_name
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: description
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: ext_accession
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  exp_date:
    name: exp_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: exp_date
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  exp_contact:
    name: exp_contact
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: exp_contact
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  method_type:
    name: method_type
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: method_type
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_experiment
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: add_date
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: datetime
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: notes
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: is_public
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: submission_id
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: integer
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: in_file
    owner: rnaseq_experiment
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false