Class: RnaseqSample

URI: img_rnaseq:RnaseqSample

classDiagram class RnaseqSample click RnaseqSample href "../RnaseqSample/" RnaseqSample : add_date RnaseqSample : analysis_project_id RnaseqSample : dataset_oid RnaseqSample : description RnaseqSample : er_project_id RnaseqSample : er_sample_id RnaseqSample : experiment RnaseqSample : experiment_date RnaseqSample : gold_id RnaseqSample : img_taxon_oid RnaseqSample : in_file RnaseqSample : is_public RnaseqSample : ncbi_taxon_id RnaseqSample : notes RnaseqSample : obsolete_flag RnaseqSample : organism_name RnaseqSample : project_sample_id RnaseqSample : sample_oid RnaseqSample : sample_origin RnaseqSample : submission_id

Slots

Name	Cardinality and Range	Inheritance
sample_oid	0..1 String	direct
description	0..1 String	direct
sample_origin	0..1 String	direct
ncbi_taxon_id	0..1 Integer	direct
organism_name	0..1 String	direct
img_taxon_oid	0..1 Integer	direct
experiment	0..1 Integer	direct
notes	0..1 String	direct
experiment_date	0..1 String	direct
gold_id	0..1 String	direct
project_sample_id	0..1 Float	direct
er_project_id	0..1 Float	direct
er_sample_id	0..1 Float	direct
analysis_project_id	0..1 Float	direct
dataset_oid	0..1 String	direct
add_date	0..1 Datetime	direct
is_public	0..1 String	direct
submission_id	0..1 Integer	direct
in_file	0..1 String	direct
obsolete_flag	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_rnaseq

Mappings

Mapping Type	Mapped Value
self	img_rnaseq:RnaseqSample
native	img_rnaseq:RnaseqSample

LinkML Source

Direct

name: rnaseq_sample
from_schema: https://w3id.org/jgi/img_rnaseq
attributes:
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    - rnaseq_sample_ext_links
    - rnaseq_sample_sop
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  sample_origin:
    name: sample_origin
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_sample
    range: string
    required: false
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_sample
    range: integer
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_sample
    range: string
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_sample
    range: integer
    required: false
  experiment:
    name: experiment
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_sample
    range: integer
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  experiment_date:
    name: experiment_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_sample
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  project_sample_id:
    name: project_sample_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    domain_of:
    - rnaseq_sample
    range: float
    required: false
  er_project_id:
    name: er_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  er_sample_id:
    name: er_sample_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  dataset_oid:
    name: dataset_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_dataset_stats
    - rnaseq_sample
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: datetime
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: integer
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false

Induced

name: rnaseq_sample
from_schema: https://w3id.org/jgi/img_rnaseq
attributes:
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: sample_oid
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    - rnaseq_sample_ext_links
    - rnaseq_sample_sop
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: description
    owner: rnaseq_sample
    domain_of:
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  sample_origin:
    name: sample_origin
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: sample_origin
    owner: rnaseq_sample
    domain_of:
    - rnaseq_sample
    range: string
    required: false
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: ncbi_taxon_id
    owner: rnaseq_sample
    domain_of:
    - rnaseq_sample
    range: integer
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: organism_name
    owner: rnaseq_sample
    domain_of:
    - rnaseq_sample
    range: string
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: img_taxon_oid
    owner: rnaseq_sample
    domain_of:
    - rnaseq_sample
    range: integer
    required: false
  experiment:
    name: experiment
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: experiment
    owner: rnaseq_sample
    domain_of:
    - rnaseq_sample
    range: integer
    required: false
  notes:
    name: notes
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: notes
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  experiment_date:
    name: experiment_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: experiment_date
    owner: rnaseq_sample
    domain_of:
    - rnaseq_sample
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: gold_id
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false
  project_sample_id:
    name: project_sample_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    rank: 1000
    alias: project_sample_id
    owner: rnaseq_sample
    domain_of:
    - rnaseq_sample
    range: float
    required: false
  er_project_id:
    name: er_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: er_project_id
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  er_sample_id:
    name: er_sample_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: er_sample_id
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: analysis_project_id
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: float
    required: false
  dataset_oid:
    name: dataset_oid
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: dataset_oid
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_dataset_stats
    - rnaseq_sample
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: add_date
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: datetime
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: is_public
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: submission_id
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: integer
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: in_file
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_experiment
    - rnaseq_sample
    range: string
    required: false
  obsolete_flag:
    name: obsolete_flag
    from_schema: https://w3id.org/jgi/img_rnaseq
    alias: obsolete_flag
    owner: rnaseq_sample
    domain_of:
    - rnaseq_dataset
    - rnaseq_sample
    range: string
    required: false