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Class: BiocycComp

URI: img_sat_v450:BiocycComp

classDiagram class BiocycComp click BiocycComp href "../BiocycComp/" BiocycComp : comments BiocycComp : common_name BiocycComp : db_source BiocycComp --> "0..1" DbSource : db_source click DbSource href "../DbSource/" BiocycComp : formula BiocycComp : inch_i_key BiocycComp : mol_wt BiocycComp : smiles BiocycComp : systematic_name BiocycComp : unique_id

Slots

Name Cardinality and Range Description Inheritance
unique_id 0..1
String		 direct
common_name 0..1
String		 direct
systematic_name 0..1
String		 direct
comments 0..1
String		 direct
mol_wt 0..1
Float		 direct
smiles 0..1
String		 direct
db_source 0..1
DbSource		 Foreign key to db_source direct
formula 0..1
String		 direct
inch_i_key 0..1
String		 direct

Usages

used by used in type used
BiocycCompExtLinks unique_id range BiocycComp
BiocycCompSynonyms unique_id range BiocycComp
BiocycCompTypes unique_id range BiocycComp
BiocycReactionLeftHand substrate range BiocycComp
BiocycReactionRightHand substrate range BiocycComp

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type Mapped Value
self img_sat_v450:BiocycComp
native img_sat_v450:BiocycComp

LinkML Source

Direct

name: biocyc_comp
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  unique_id:
    name: unique_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: string
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway
    - biocyc_protein
    - biocyc_reaction
    - compound
    range: string
    required: false
  systematic_name:
    name: systematic_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_comp
    - biocyc_protein
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    range: string
    required: false
  mol_wt:
    name: mol_wt
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_comp
    range: float
    required: false
  smiles:
    name: smiles
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    range: db_source
    required: false
  formula:
    name: formula
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  inch_i_key:
    name: inch_i_key
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_comp
    range: string
    required: false

Induced

name: biocyc_comp
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  unique_id:
    name: unique_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: unique_id
    owner: biocyc_comp
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: string
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: common_name
    owner: biocyc_comp
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway
    - biocyc_protein
    - biocyc_reaction
    - compound
    range: string
    required: false
  systematic_name:
    name: systematic_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: systematic_name
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - biocyc_protein
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: comments
    owner: biocyc_comp
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    range: string
    required: false
  mol_wt:
    name: mol_wt
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: mol_wt
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    range: float
    required: false
  smiles:
    name: smiles
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: smiles
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: db_source
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    range: db_source
    required: false
  formula:
    name: formula
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: formula
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  inch_i_key:
    name: inch_i_key
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: inch_i_key
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    range: string
    required: false