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Class: BiocycPathwayInSpecies

URI: img_sat_v450:BiocycPathwayInSpecies

classDiagram class BiocycPathwayInSpecies click BiocycPathwayInSpecies href "../BiocycPathwayInSpecies/" BiocycPathwayInSpecies : in_species BiocycPathwayInSpecies : unique_id BiocycPathwayInSpecies --> "0..1" BiocycPathway : unique_id click BiocycPathway href "../BiocycPathway/"

Slots

Name Cardinality and Range Description Inheritance
unique_id 0..1
BiocycPathway		 Foreign key to biocyc_pathway direct
in_species 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type Mapped Value
self img_sat_v450:BiocycPathwayInSpecies
native img_sat_v450:BiocycPathwayInSpecies

LinkML Source

Direct

name: biocyc_pathway_in_species
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  unique_id:
    name: unique_id
    description: Foreign key to biocyc_pathway
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: biocyc_pathway
    required: false
  in_species:
    name: in_species
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_pathway_in_species
    - biocyc_protein_in_species
    range: string
    required: false

Induced

name: biocyc_pathway_in_species
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  unique_id:
    name: unique_id
    description: Foreign key to biocyc_pathway
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: unique_id
    owner: biocyc_pathway_in_species
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: biocyc_pathway
    required: false
  in_species:
    name: in_species
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: in_species
    owner: biocyc_pathway_in_species
    domain_of:
    - biocyc_pathway_in_species
    - biocyc_protein_in_species
    range: string
    required: false