Class: BiocycReaction

URI: img_sat_v450:BiocycReaction

classDiagram class BiocycReaction click BiocycReaction href "../BiocycReaction/" BiocycReaction : balance_state BiocycReaction : comments BiocycReaction : common_name BiocycReaction : ec_number BiocycReaction : is_official_ec BiocycReaction --> "0..1" Yesnocv : is_official_ec click Yesnocv href "../Yesnocv/" BiocycReaction : is_orphan BiocycReaction --> "0..1" Yesnocv : is_orphan click Yesnocv href "../Yesnocv/" BiocycReaction : is_spontaneous BiocycReaction --> "0..1" Yesnocv : is_spontaneous click Yesnocv href "../Yesnocv/" BiocycReaction : unique_id

Slots

Name	Cardinality and Range	Description	Inheritance
unique_id	0..1 String		direct
common_name	0..1 String		direct
balance_state	0..1 String		direct
ec_number	0..1 String		direct
is_official_ec	0..1 Yesnocv	Foreign key to yesnocv	direct
is_orphan	0..1 Yesnocv	Foreign key to yesnocv	direct
is_spontaneous	0..1 Yesnocv	Foreign key to yesnocv	direct
comments	0..1 String		direct

Usages

used by	used in	type	used
BiocycEnzrxn	Reaction	range	BiocycReaction
BiocycReactionExtLinks	unique_id	range	BiocycReaction
BiocycReactionInPwys	unique_id	range	BiocycReaction
BiocycReactionLeftHand	unique_id	range	BiocycReaction
BiocycReactionRightHand	unique_id	range	BiocycReaction
BiocycReactionSynonyms	unique_id	range	BiocycReaction
BiocycReactionTypes	unique_id	range	BiocycReaction

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type	Mapped Value
self	img_sat_v450:BiocycReaction
native	img_sat_v450:BiocycReaction

LinkML Source

Direct

name: biocyc_reaction
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  unique_id:
    name: unique_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: string
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway
    - biocyc_protein
    - biocyc_reaction
    - compound
    range: string
    required: false
  balance_state:
    name: balance_state
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_reaction
    range: string
    required: false
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_protein_catalyzes
    - biocyc_reaction
    - enzyme
    - enzyme_enz_aliases
    - enzyme_ext_links
    - enzyme_products
    - enzyme_substrates
    - enzyme_transferred
    - ko2ec
    range: string
    required: false
  is_official_ec:
    name: is_official_ec
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_reaction
    range: yesnocv
    required: false
  is_orphan:
    name: is_orphan
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_reaction
    range: yesnocv
    required: false
  is_spontaneous:
    name: is_spontaneous
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - biocyc_reaction
    range: yesnocv
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    range: string
    required: false

Induced

name: biocyc_reaction
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  unique_id:
    name: unique_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: unique_id
    owner: biocyc_reaction
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: string
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: common_name
    owner: biocyc_reaction
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway
    - biocyc_protein
    - biocyc_reaction
    - compound
    range: string
    required: false
  balance_state:
    name: balance_state
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: balance_state
    owner: biocyc_reaction
    domain_of:
    - biocyc_reaction
    range: string
    required: false
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: ec_number
    owner: biocyc_reaction
    domain_of:
    - biocyc_protein_catalyzes
    - biocyc_reaction
    - enzyme
    - enzyme_enz_aliases
    - enzyme_ext_links
    - enzyme_products
    - enzyme_substrates
    - enzyme_transferred
    - ko2ec
    range: string
    required: false
  is_official_ec:
    name: is_official_ec
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: is_official_ec
    owner: biocyc_reaction
    domain_of:
    - biocyc_reaction
    range: yesnocv
    required: false
  is_orphan:
    name: is_orphan
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: is_orphan
    owner: biocyc_reaction
    domain_of:
    - biocyc_reaction
    range: yesnocv
    required: false
  is_spontaneous:
    name: is_spontaneous
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: is_spontaneous
    owner: biocyc_reaction
    domain_of:
    - biocyc_reaction
    range: yesnocv
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: comments
    owner: biocyc_reaction
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    range: string
    required: false