Class: Kog

URI: img_sat_v450:Kog

classDiagram class Kog click Kog href "../Kog/" Kog : add_date Kog : db_source Kog --> "0..1" DbSource : db_source click DbSource href "../DbSource/" Kog : description Kog : kog_id Kog : kog_name Kog : seq_length

Slots

Name	Cardinality and Range	Description	Inheritance
kog_id	0..1 String		direct
kog_name	0..1 String		direct
description	0..1 String		direct
db_source	0..1 DbSource	Foreign key to db_source	direct
add_date	0..1 Datetime		direct
seq_length	0..1 Integer		direct

Usages

used by	used in	type	used
KogFamilies	kog_id	range	Kog
KogFunctions	kog_id	range	Kog
KogPathwayKogMembers	kog_members	range	Kog

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type	Mapped Value
self	img_sat_v450:Kog
native	img_sat_v450:Kog

LinkML Source

Direct

name: kog
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  kog_id:
    name: kog_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - kog
    - kog_families
    - kog_functions
    range: string
    required: false
  kog_name:
    name: kog_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - kog
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - yesnocv
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    range: db_source
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  seq_length:
    name: seq_length
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - kog
    - pfam_family
    range: integer
    required: false

Induced

name: kog
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  kog_id:
    name: kog_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: kog_id
    owner: kog
    domain_of:
    - kog
    - kog_families
    - kog_functions
    range: string
    required: false
  kog_name:
    name: kog_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: kog_name
    owner: kog
    domain_of:
    - kog
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: description
    owner: kog
    domain_of:
    - cog
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - yesnocv
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: db_source
    owner: kog
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    range: db_source
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: add_date
    owner: kog
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  seq_length:
    name: seq_length
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: seq_length
    owner: kog
    domain_of:
    - cog
    - kog
    - pfam_family
    range: integer
    required: false