Skip to content

Class: MpwPglPathway

URI: img_sat_v450:MpwPglPathway

classDiagram class MpwPglPathway click MpwPglPathway href "../MpwPglPathway/" MpwPglPathway : add_date MpwPglPathway : file_name MpwPglPathway : mpw_id MpwPglPathway : overall_reaction MpwPglPathway : pathway_name MpwPglPathway : pathway_oid

Slots

Name Cardinality and Range Description Inheritance
pathway_oid 0..1
Integer		 direct
pathway_name 0..1
String		 direct
file_name 0..1
String		 direct
add_date 0..1
String		 direct
mpw_id 0..1
String		 direct
overall_reaction 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type Mapped Value
self img_sat_v450:MpwPglPathway
native img_sat_v450:MpwPglPathway

LinkML Source

Direct

name: mpw_pgl_pathway
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - kegg_pathway
    - kegg_pathway_modules
    - kegg_pathway_related_pathways
    - ko_term_pathways
    - mpw_pgl_pathway
    - mpw_pgl_pathway_reaction
    range: integer
    required: false
  pathway_name:
    name: pathway_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - kegg_pathway
    - mpw_pgl_pathway
    range: string
    required: false
  file_name:
    name: file_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - mpw_pgl_pathway
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: string
    required: false
  mpw_id:
    name: mpw_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - mpw_pgl_pathway
    range: string
    required: false
  overall_reaction:
    name: overall_reaction
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - mpw_pgl_pathway
    range: string
    required: false

Induced

name: mpw_pgl_pathway
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: pathway_oid
    owner: mpw_pgl_pathway
    domain_of:
    - kegg_pathway
    - kegg_pathway_modules
    - kegg_pathway_related_pathways
    - ko_term_pathways
    - mpw_pgl_pathway
    - mpw_pgl_pathway_reaction
    range: integer
    required: false
  pathway_name:
    name: pathway_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: pathway_name
    owner: mpw_pgl_pathway
    domain_of:
    - kegg_pathway
    - mpw_pgl_pathway
    range: string
    required: false
  file_name:
    name: file_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: file_name
    owner: mpw_pgl_pathway
    domain_of:
    - mpw_pgl_pathway
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: add_date
    owner: mpw_pgl_pathway
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: string
    required: false
  mpw_id:
    name: mpw_id
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: mpw_id
    owner: mpw_pgl_pathway
    domain_of:
    - mpw_pgl_pathway
    range: string
    required: false
  overall_reaction:
    name: overall_reaction
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: overall_reaction
    owner: mpw_pgl_pathway
    domain_of:
    - mpw_pgl_pathway
    range: string
    required: false